Rorug02G0069600

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
5420689 .. 5421621
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0069600.1

Sequence Viewer

Length: 321 bp
ATGGATTTGGTACTCATTCCTTACTGGCATCGTACTCGCAGTTTTCTGGCTGTATTACATGTTGAGATTGCCAAGATTCCGCTGGGATGTAATCTGGCTGCCGTTTGGACCTATAAGTGGAGCTGGACTCTGTCTATATGTGGATCATCTGCTAATGGAGTCATCAGAAGAGATAAGAAAACTTCGAGGCTATATGTATTCTTACAAAGCCAGATGAACGTCGTTATGGAAATAGAAGCAAAGATGGACGTGCTATCACTACGGAGGGAAATGTTCACCCTTCCATTGAACCTCTGTAGTTGCTCTGCACTCGGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.14

Weight (kDa)

9.3

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 151
AfaI GTAC 2 cut(s) 12, 34
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 1 cut(s) 289
AjiI CACGTC 1 cut(s) 250
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
AlwI GGATC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 108
BmsI GCATC 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 117
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 29
BssMI GATC 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstNSI RCATGY 2 cut(s) 62, 319
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 85
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 11, 33
CviAII CATG 2 cut(s) 59, 316
CviJI RGCY 5 cut(s) 50, 98, 123, 190, 210
CviKI_1 RGCY 5 cut(s) 50, 98, 123, 190, 210
CviQI GTAC 2 cut(s) 11, 33
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 108
FaeI CATG 2 cut(s) 62, 319
FaiI YATR 8 cut(s) 60, 114, 137, 139, 193, 195, 227, 317
FatI CATG 2 cut(s) 58, 315
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 62, 319
HinfI GANTC 3 cut(s) 76, 127, 159
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 219, 249
HpyCH4V TGCA 1 cut(s) 308
HpySE526I ACGT 2 cut(s) 219, 249
Hsp92II CATG 2 cut(s) 62, 319
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 6 cut(s) 10, 32, 68, 80, 109, 224
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 37
MaeII ACGT 2 cut(s) 219, 249
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 1 cut(s) 180
MlyI GAGTC 2 cut(s) 121, 168
MnlI CCTC 3 cut(s) 180, 258, 302
MspA1I CMGCKG 1 cut(s) 82
NdeII GATC 1 cut(s) 143
NlaIII CATG 2 cut(s) 62, 319
NmeAIII GCCGAG 1 cut(s) 291
NspI RCATGY 2 cut(s) 62, 319
PciI ACATGT 1 cut(s) 58
PfeI GAWTC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 2 cut(s) 121, 167
PpsI GAGTC 2 cut(s) 121, 167
PscI ACATGT 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 108
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 2 cut(s) 12, 34
RsaNI GTAC 2 cut(s) 11, 33
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 2 cut(s) 121, 168
SetI ASST 5 cut(s) 113, 125, 222, 252, 294
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 1 cut(s) 108
SsiI CCGC 1 cut(s) 80
TaiI ACGT 2 cut(s) 222, 252
TaqI TCGA 1 cut(s) 185
TfiI GAWTC 1 cut(s) 76
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 108
XceI RCATGY 2 cut(s) 62, 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.