Rmu_sc0002648.1_g000005

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002648.1
OG0000448
Physical Location & Seq
Forward (+)
11160 .. 12314
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002648.1_g000005.1.cds

Sequence Viewer

Length: 408 bp
atggcaaagtcgaagctgatgatgctttttgtttcattttgtttgttatctgtgtttagtgcatctgaggtagctccgcctgcggccattttcatatttggagactcaactgtggatgttggcaccaataccttgttgctccaaagtggagcaagggctgatttctctccaaatggggttgattttccttattctgtgcctactgggaggttcagcaatggccttaacagcgctgaccaaatcgtgaaactatttggacgccggaaaagtccaccacctttcttgtatgccgcgagtcatatgtccacttttaaaaggaatatactgcagggagtcaactttgcttcagcgggaagtggcatcttccaagacacggggataaaaagatgggtaagcacagataaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

135

Amino Acids

14.54

Weight (kDa)

9.73

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 1 cut(s) 293
AciI CCGC 4 cut(s) 77, 83, 291, 350
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 259
AfeI AGCGCT 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 16, 74
AluI AGCT 2 cut(s) 16, 74
Alw26I GTCTC 1 cut(s) 96
Aor51HI AGCGCT 1 cut(s) 232
AoxI GGCC 2 cut(s) 84, 220
AspLEI GCGC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 122
BccI CCATC 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 2 cut(s) 84, 291
BlsI GCNGC 2 cut(s) 85, 292
BmiI GGNNCC 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 3 cut(s) 12, 71, 369
BmuI ACTGGG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 223
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 2 cut(s) 86, 222
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 2 cut(s) 86, 222
BspACI CCGC 4 cut(s) 77, 83, 291, 350
BspANI GGCC 2 cut(s) 86, 222
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 96
BstMWI GCNNNNNNNGC 3 cut(s) 22, 80, 228
BstSFI CTRYAG 1 cut(s) 326
BstUI CGCG 1 cut(s) 293
BsuRI GGCC 2 cut(s) 86, 222
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 233
CseI GACGC 1 cut(s) 267
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviJI RGCY 5 cut(s) 16, 74, 86, 158, 222
CviKI_1 RGCY 5 cut(s) 16, 74, 86, 158, 222
DdeI CTNAG 1 cut(s) 66
DraI TTTAAA 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 84
EciI GGCGGA 1 cut(s) 66
Eco47III AGCGCT 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 330
FaiI YATR 5 cut(s) 95, 288, 300, 302, 323
FauI CCCGC 1 cut(s) 343
FauNDI CATATG 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 84, 291
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 84, 291
GlaI GCGC 1 cut(s) 232
GluI GCNGC 2 cut(s) 84, 291
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 86, 222
HapII CCGG 1 cut(s) 262
HgaI GACGC 1 cut(s) 267
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 259
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 3 cut(s) 104, 295, 333
HpaII CCGG 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 272, 306, 337
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 3 cut(s) 272, 306, 337
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 62, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 80, 228
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 259
HspAI GCGC 1 cut(s) 231
LmnI GCTCC 3 cut(s) 79, 144, 149
LpnPI CCDG 4 cut(s) 93, 189, 275, 314
LweI GCATC 3 cut(s) 12, 71, 369
MboII GAAGA 1 cut(s) 355
MlyI GAGTC 3 cut(s) 98, 304, 342
MnlI CCTC 2 cut(s) 61, 201
MseI TTAA 2 cut(s) 225, 312
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 22, 80, 228
NdeI CATATG 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 85, 292
PleI GAGTC 3 cut(s) 98, 303, 341
PpsI GAGTC 3 cut(s) 98, 303, 341
PspN4I GGNNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 330
SaqAI TTAA 2 cut(s) 225, 312
SatI GCNGC 2 cut(s) 84, 291
SchI GAGTC 3 cut(s) 98, 304, 342
SetI ASST 6 cut(s) 18, 72, 76, 134, 212, 280
SfaNI GCATC 3 cut(s) 12, 71, 369
SfcI CTRYAG 1 cut(s) 326
SsiI CCGC 4 cut(s) 77, 83, 291, 350
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 11
TauI GCSGC 2 cut(s) 86, 293
Tru1I TTAA 2 cut(s) 225, 312
Tru9I TTAA 2 cut(s) 225, 312
TspDTI ATGAA 2 cut(s) 24, 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.