Prupe.8G172800_v2.0.a1

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000448
Physical Location & Seq
Reverse (-)
17619030 .. 17620593
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G172800.1

Sequence Viewer

Length: 1134 bp
ATGGAAAACAAATCATGGGTTGGTCTTCTAGTTCTATGTTTGGCTATAGCTGTTGTTGGTTTAGCAGAAGCAGGTGTGCCTGCAATCTTCATACTAGGGGACTCAACTGCTGATGTTGGCACCAACAACTTCTTGCCTGGTAGCATGGCAAGGGCTGACTTTCCCCACAATGGCGTTGACTTTCCTTTCTCAAGAGCCACTGGAAGGTTCAGCAATGGCCTTAACAGTGCTGATTTTCTCTCTAAGCAATTCGGTCTTAAGAGAAGCCCGCGGCCTTTTCTTTCTCTCAACACTACATCTCTTCACAAGAAGAGCTTTAGAGGTGTGAACTTTGCTTCTGGAGGGTCTGGCCTTCTTGACATAACAGGACGAACAATGCTGACTTTGATGAAGTTTGGAAAAGAGAGAATTCCATTTGGTGCCCCATTCTTCAATCGAAAAAATGTTATCACATTATCAGAGCAGATACAGCAACTTTCTCTTGTCAAGAGCAATCTTGCTGCCATCAAAGGGCAAAGGTTAACTGAGAAGTTGATCTCAAAGTCTTTGTTCTTCATCAGCACGGGTAGCAATGACTTGTTTGGATATTACCATTCAAACACTTCCTTCTCCGAGGAAGCTTTCCTATCGTCTTTAGAACTTGCTTATGAGAAGCACTTGAAGAGTTTGATCGATCTTGGAGCGAGAAAGTTTGGCATTATCAGCGTTGCCCCGATTGGATGCTGTCCATCTCAGAGGATTTACAATACTACTGGGGGGTGTTTGGAAGATTTGAACGATCTCGCAATCGCTTTTCATGCAAGGTTGGATGCCCTCTTGTTCAAGCTCAGCTCAGAACATAAGAGCATCAAGTACTCACTTGGAAATGCATTTGAGATGACAATAAATGTCATTCAGTACCCTCTTGCATTCAATTTTACTCAAGTGGAAGCTGCGTGTTGCGGAGCTGGGAAGCTCAATGCTGAATCCTTCTGTAGTCCAAAAGCCAAACTTTGCCCGAATCGCAACAATTACTTGTTCTGGGATCTATTTCATCCAACACAGGCTGCTTCTAAGTTAGCAGCCGTAACCCTCTACAATGGTGGACCACAATTCGTATACCCGATTAATTTCGCTCAGTTGGCCAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

378

Amino Acids

41.09

Weight (kDa)

9.25

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 2 cut(s) 119, 419
AccI GTMKAC 1 cut(s) 1098
AccII CGCG 1 cut(s) 271
AciI CCGC 3 cut(s) 269, 271, 942
AclWI GGATC 1 cut(s) 1032
AcoI YGGCCR 1 cut(s) 1122
AcsI RAATTY 1 cut(s) 408
AfaI GTAC 2 cut(s) 854, 899
AfiI CCNNNNNNNGG 3 cut(s) 170, 204, 510
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 6 cut(s) 433, 597, 661, 775, 823, 913
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 8 cut(s) 50, 315, 620, 826, 831, 932, 947, 955
AluI AGCT 8 cut(s) 50, 315, 620, 826, 831, 932, 947, 955
AlwI GGATC 1 cut(s) 1032
AoxI GGCC 4 cut(s) 217, 272, 349, 1122
ApeKI GCWGC 4 cut(s) 500, 932, 1046, 1061
ApoI RAATTY 1 cut(s) 408
AseI ATTAAT 1 cut(s) 1107
AspS9I GGNCC 1 cut(s) 1085
AvaII GGWCC 1 cut(s) 1085
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 1124
BanI GGYRCC 2 cut(s) 119, 419
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 487, 919, 1033, 1073
BccI CCATC 2 cut(s) 512, 736
BceAI ACGGC 1 cut(s) 1049
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 2 cut(s) 29, 95
BfmI CTRYAG 2 cut(s) 45, 973
BfrI CTTAAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 272, 501, 933, 1047, 1062
BlpI GCTNAGC 1 cut(s) 827
BlsI GCNGC 5 cut(s) 273, 502, 934, 1048, 1063
BmcAI AGTACT 1 cut(s) 854
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 1085
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 2 cut(s) 121, 421
BmrFI CCNGG 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 762
BmsI GCATC 3 cut(s) 710, 799, 855
BmuI ACTGGG 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 827
BpuEI CTTGAG 2 cut(s) 175, 906
Bsa29I ATCGAT 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 269, 612, 1125
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 204, 510
Bse1I ACTGG 2 cut(s) 205, 757
Bse3DI GCAATG 2 cut(s) 220, 577
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 672
BseDI CCNNGG 3 cut(s) 269, 612, 1125
BseGI GGATG 3 cut(s) 725, 814, 1033
BseLI CCNNNNNNNGG 3 cut(s) 170, 204, 510
BseMI GCAATG 2 cut(s) 220, 577
BseMII CTCAG 5 cut(s) 516, 746, 841, 846, 1130
BseNI ACTGG 2 cut(s) 205, 757
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 4 cut(s) 487, 919, 1033, 1073
BseYI CCCAGC 1 cut(s) 947
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 4 cut(s) 219, 274, 351, 1124
BshNI GGYRCC 2 cut(s) 119, 419
BshVI ATCGAT 1 cut(s) 672
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 170, 204, 510
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 4 cut(s) 219, 274, 351, 1124
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 5 cut(s) 534, 669, 673, 778, 1024
Bsp1720I GCTNAGC 1 cut(s) 827
BspACI CCGC 3 cut(s) 269, 271, 942
BspANI GGCC 4 cut(s) 219, 274, 351, 1124
BspCNI CTCAG 5 cut(s) 517, 745, 840, 845, 1129
BspDI ATCGAT 1 cut(s) 672
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 121, 421
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 1032
BspQI GCTCTTC 1 cut(s) 305
BspT107I GGYRCC 2 cut(s) 119, 419
BspTI CTTAAG 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 220, 577
BsrI ACTGG 2 cut(s) 205, 757
BssECI CCNNGG 3 cut(s) 269, 612, 1125
BssMI GATC 5 cut(s) 534, 669, 673, 778, 1024
BssNAI GTATAC 1 cut(s) 1099
BssT1I CCWWGG 1 cut(s) 1125
Bst1107I GTATAC 1 cut(s) 1099
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 3 cut(s) 305, 306, 656
BstAFI CTTAAG 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 81, 269
BstDEI CTNAG 7 cut(s) 243, 525, 732, 827, 832, 1053, 1116
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 725, 814, 1033
BstFNI CGCG 1 cut(s) 271
BstKTI GATC 5 cut(s) 537, 672, 676, 781, 1027
BstMBI GATC 5 cut(s) 534, 669, 673, 778, 1024
BstMWI GCNNNNNNNGC 6 cut(s) 469, 567, 702, 797, 1002, 1121
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 2 cut(s) 45, 973
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 487, 919, 1033, 1073
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 1024
BstYI RGATCY 1 cut(s) 1024
BstZ17I GTATAC 1 cut(s) 1099
Bsu15I ATCGAT 1 cut(s) 672
BsuRI GGCC 4 cut(s) 219, 274, 351, 1124
BsuTUI ATCGAT 1 cut(s) 672
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 3 cut(s) 725, 814, 1033
BtsIMutI CAGTG 2 cut(s) 198, 232
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 81, 269
Cfr13I GGNCC 1 cut(s) 1085
Cfr42I CCGCGG 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 672
Csp6I GTAC 2 cut(s) 853, 898
CviAII CATG 3 cut(s) 15, 145, 797
CviQI GTAC 2 cut(s) 853, 898
DdeI CTNAG 7 cut(s) 243, 525, 732, 827, 832, 1053, 1116
DpnI GATC 5 cut(s) 536, 671, 675, 780, 1026
DpnII GATC 5 cut(s) 534, 669, 673, 778, 1024
EaeI YGGCCR 1 cut(s) 1122
Eam1104I CTCTTC 3 cut(s) 305, 306, 656
EarI CTCTTC 3 cut(s) 305, 306, 656
Eco130I CCWWGG 1 cut(s) 1125
Eco47I GGWCC 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 1125
EcoT22I ATGCAT 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 1125
FaeI CATG 3 cut(s) 18, 148, 800
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 975, 1007
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 14, 144, 796
FauI CCCGC 1 cut(s) 276
FblI GTMKAC 1 cut(s) 1098
Fnu4HI GCNGC 5 cut(s) 272, 501, 933, 1047, 1062
FokI GGATG 3 cut(s) 732, 821, 1020
Fsp4HI GCNGC 5 cut(s) 272, 501, 933, 1047, 1062
FspBI CTAG 2 cut(s) 29, 95
GluI GCNGC 5 cut(s) 272, 501, 933, 1047, 1062
GsaI CCCAGC 1 cut(s) 951
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 4 cut(s) 219, 274, 351, 1124
Hin1II CATG 3 cut(s) 18, 148, 800
HincII GTYRAC 2 cut(s) 178, 522
HindII GTYRAC 2 cut(s) 178, 522
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 3 cut(s) 101, 965, 1000
HpaI GTTAAC 1 cut(s) 522
Hpy166II GTNNAC 5 cut(s) 178, 328, 522, 1085, 1099
Hpy188I TCNGA 4 cut(s) 460, 613, 735, 835
Hpy188III TCNNGA 4 cut(s) 192, 339, 356, 487
Hpy8I GTNNAC 5 cut(s) 178, 328, 522, 1085, 1099
HpyAV CCTTC 4 cut(s) 198, 362, 616, 979
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 4 cut(s) 83, 800, 869, 908
HpyF10VI GCNNNNNNNGC 6 cut(s) 469, 567, 702, 797, 1002, 1121
HpyF3I CTNAG 7 cut(s) 243, 525, 732, 827, 832, 1053, 1116
Hsp92II CATG 3 cut(s) 18, 148, 800
KspAI GTTAAC 1 cut(s) 522
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 5 cut(s) 534, 669, 673, 778, 1024
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 2 cut(s) 680, 944
Lsp1109I GCAGC 4 cut(s) 487, 919, 1033, 1073
LweI GCATC 3 cut(s) 710, 799, 855
MaeI CTAG 2 cut(s) 29, 95
MaeIII GTNAC 1 cut(s) 1066
MalI GATC 5 cut(s) 536, 671, 675, 780, 1026
MboI GATC 5 cut(s) 534, 669, 673, 778, 1024
MboII GAAGA 8 cut(s) 17, 79, 293, 322, 421, 544, 673, 779
MflI RGATCY 1 cut(s) 1024
MhlI GDGCHC 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 1124
MluCI AATT 6 cut(s) 248, 408, 913, 1009, 1091, 1108
MluNI TGGCCA 1 cut(s) 1124
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 786, 1061
MnlI CCTC 7 cut(s) 314, 335, 607, 729, 824, 912, 1082
Mox20I TGGCCA 1 cut(s) 1124
Mph1103I ATGCAT 1 cut(s) 871
MscI TGGCCA 1 cut(s) 1124
MseI TTAA 5 cut(s) 222, 258, 521, 1107, 1132
Msp20I TGGCCA 1 cut(s) 1124
MspA1I CMGCKG 1 cut(s) 271
MspCI CTTAAG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 6 cut(s) 469, 567, 702, 797, 1002, 1121
NdeII GATC 5 cut(s) 534, 669, 673, 778, 1024
NlaIII CATG 3 cut(s) 18, 148, 800
NlaIV GGNNCC 2 cut(s) 121, 421
NsiI ATGCAT 1 cut(s) 871
PaqCI CACCTGC 1 cut(s) 62
PciSI GCTCTTC 1 cut(s) 305
PctI GAATGC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 965, 1000
PkrI GCNGC 5 cut(s) 273, 502, 934, 1048, 1063
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PshBI ATTAAT 1 cut(s) 1107
Psp6I CCWGG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 121, 421
PspPI GGNCC 1 cut(s) 1085
PsuI RGATCY 1 cut(s) 1024
RsaI GTAC 2 cut(s) 854, 899
RsaNI GTAC 2 cut(s) 853, 898
SacII CCGCGG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 5 cut(s) 222, 258, 521, 1107, 1132
SatI GCNGC 5 cut(s) 272, 501, 933, 1047, 1062
Sau3AI GATC 5 cut(s) 534, 669, 673, 778, 1024
Sau96I GGNCC 1 cut(s) 1085
ScaI AGTACT 1 cut(s) 854
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 424
SfaNI GCATC 3 cut(s) 710, 799, 855
SfcI CTRYAG 2 cut(s) 45, 973
Sfr303I CCGCGG 1 cut(s) 272
SgrBI CCGCGG 1 cut(s) 272
SinI GGWCC 1 cut(s) 1085
SmlI CTYRAG 3 cut(s) 190, 257, 921
SmoI CTYRAG 3 cut(s) 190, 257, 921
Sse9I AATT 6 cut(s) 248, 408, 913, 1009, 1091, 1108
SsiI CCGC 3 cut(s) 269, 271, 942
SspMI CTAG 2 cut(s) 29, 95
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 1125
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 436, 672
TaqII GACCGA 1 cut(s) 242
TasI AATT 6 cut(s) 248, 408, 913, 1009, 1091, 1108
TatI WGTACW 1 cut(s) 852
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 2 cut(s) 965, 1000
Tru1I TTAA 5 cut(s) 222, 258, 521, 1107, 1132
Tru9I TTAA 5 cut(s) 222, 258, 521, 1107, 1132
TscAI CASTG 2 cut(s) 205, 232
TseI GCWGC 4 cut(s) 500, 932, 1046, 1061
TspDTI ATGAA 5 cut(s) 79, 404, 544, 785, 1022
TspRI CASTG 2 cut(s) 205, 232
Vha464I CTTAAG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 1085
VspI ATTAAT 1 cut(s) 1107
XapI RAATTY 1 cut(s) 408
XmiI GTMKAC 1 cut(s) 1098
XspI CTAG 2 cut(s) 29, 95
ZrmI AGTACT 1 cut(s) 854
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.