Rmu_sc0004649.1_g000021

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004649.1
OG0000448
Physical Location & Seq
Forward (+)
66942 .. 68651
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004649.1_g000021.1.cds

Sequence Viewer

Length: 1236 bp
atggaaaacaaatgggttcttcctctagccctttccttgtttataactgttcttagcttggcagcagcagctaagccagtactgccaccagtcttcatatttggtgattcaacagcagatgtcggcaccaataacttcttgccggctagcaaggcaagagctaactttccccccaatggcattgactttcctggcacctcaaaacccaccggaaggttcagtaatggccttaacagtgctgattttcttgtccggcattttggttacaagagaagtccaagcccctttctttctctgaaaactacttctcttcaaaagaagaagtttaatggtatcaactttgcttctggagggtctggtcttcttgacataactggacggacaatggcaagtcactttcttggggaacaagttactttaagcataagatggctctttctgacattgatgaagtttggaactggaaatattccatttggtgcctcattcaaaaaccagaaaaatgttatctcattaacagagcagatacagcaattttcatctgtcaagaacaatcttacggccttgatgggtgcggtagcaactgagaagtttcttaaagattctttgatcttcatcagcaccggcagcaatgaccttttcggatactaccattcaaagagttccattccaaaggaaaagttcttgtcctctttagaagtagcttatgagaatcacttgaaggtgacatacttcagtctttttatgttaagcacattgtcttgtactctatacaatcttggagcaaggaagtttggcatcatcagcattgccccgattggctgctgcccatctcagaggattttcaatgctactggaggatgtttggaagagctgaatgataatgcaatagcttttcattcaagattggatgccctcttgtgcaagcttagctcagaatacaagggcatgaagtactcacttggaaattcatatgaaatgacaatcaatgtcatacagaaccctcttccattcaattttacacaagtggcagctgcatgttgtggaactgggaagctcaatgctgaaaactattgtaaaccacatgcaaatctctgttcggatcgccatcaatatttgttctgggatcgatttcatccaacacaggctgcttctaagttggccgctattgccctctacagtggtggaccacaatttgtatccccaattaatttttctcagttggccaaggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

411

Amino Acids

44.92

Weight (kDa)

9.38

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AccB1I GGYRCC 3 cut(s) 125, 194, 479
AciI CCGC 2 cut(s) 575, 1164
AclWI GGATC 2 cut(s) 1110, 1134
AcoI YGGCCR 2 cut(s) 1161, 1224
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 1 cut(s) 718
AfaI GTAC 3 cut(s) 81, 766, 956
AfiI CCNNNNNNNGG 2 cut(s) 176, 213
AgsI TTSAA 8 cut(s) 111, 314, 490, 657, 721, 847, 903, 1015
AjnI CCWGG 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 1198, 1230
AlwI GGATC 2 cut(s) 1110, 1134
AoxI GGCC 4 cut(s) 226, 561, 1161, 1224
ApeKI GCWGC 9 cut(s) 62, 65, 68, 627, 822, 825, 1031, 1034, 1148
ApoI RAATTY 1 cut(s) 967
AseI ATTAAT 1 cut(s) 1209
AspS9I GGNCC 1 cut(s) 1187
AsuHPI GGTGA 2 cut(s) 116, 736
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 1187
BalI TGGCCA 1 cut(s) 1226
BanI GGYRCC 3 cut(s) 125, 194, 479
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
BbsI GAAGAC 2 cut(s) 85, 353
BbvI GCAGC 9 cut(s) 74, 77, 80, 639, 809, 812, 1021, 1043, 1135
BccI CCATC 4 cut(s) 423, 562, 838, 1116
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 2 cut(s) 638, 1210
BfaI CTAG 2 cut(s) 26, 147
BfmI CTRYAG 1 cut(s) 1177
BfuI GTATCC 2 cut(s) 638, 1210
BlpI GCTNAGC 2 cut(s) 72, 929
BmcAI AGTACT 2 cut(s) 81, 956
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 1187
BmgT120I GGNCC 1 cut(s) 1187
BmiI GGNNCC 3 cut(s) 127, 196, 481
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 2 cut(s) 807, 901
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 1059
BpiI GAAGAC 2 cut(s) 85, 353
BpmI CTGGAG 2 cut(s) 369, 876
Bpu1102I GCTNAGC 2 cut(s) 72, 929
Bsa29I ATCGAT 1 cut(s) 1129
BsaBI GATNNNNATC 2 cut(s) 614, 1107
BsaJI CCNNGG 1 cut(s) 1227
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 213
Bse118I RCCGGY 2 cut(s) 142, 623
Bse1I ACTGG 6 cut(s) 77, 89, 379, 466, 859, 1054
Bse3DI GCAATG 2 cut(s) 637, 807
Bse8I GATNNNNATC 2 cut(s) 614, 1107
BseBI CCWGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 1129
BseDI CCNNGG 1 cut(s) 1227
BseGI GGATG 3 cut(s) 866, 916, 1135
BseJI GATNNNNATC 2 cut(s) 614, 1107
BseLI CCNNNNNNNGG 2 cut(s) 176, 213
BseMI GCAATG 2 cut(s) 637, 807
BseMII CTCAG 4 cut(s) 576, 848, 948, 1232
BseNI ACTGG 6 cut(s) 77, 89, 379, 466, 859, 1054
BseXI GCAGC 9 cut(s) 74, 77, 80, 639, 809, 812, 1021, 1043, 1135
BshFI GGCC 4 cut(s) 228, 563, 1163, 1226
BshNI GGYRCC 3 cut(s) 125, 194, 479
BshVI ATCGAT 1 cut(s) 1129
BsiSI CCGG 4 cut(s) 143, 210, 253, 624
BslI CCNNNNNNNGG 2 cut(s) 176, 213
BsnI GGCC 4 cut(s) 228, 563, 1163, 1226
Bsp143I GATC 3 cut(s) 609, 1102, 1126
Bsp1720I GCTNAGC 2 cut(s) 72, 929
BspACI CCGC 2 cut(s) 575, 1164
BspANI GGCC 4 cut(s) 228, 563, 1163, 1226
BspCNI CTCAG 4 cut(s) 577, 847, 947, 1231
BspDI ATCGAT 1 cut(s) 1129
BspLI GGNNCC 3 cut(s) 127, 196, 481
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 2 cut(s) 1110, 1134
BspQI GCTCTTC 1 cut(s) 864
BspT107I GGYRCC 3 cut(s) 125, 194, 479
BsrDI GCAATG 2 cut(s) 637, 807
BsrFI RCCGGY 2 cut(s) 142, 623
BsrI ACTGG 6 cut(s) 77, 89, 379, 466, 859, 1054
BssAI RCCGGY 2 cut(s) 142, 623
BssECI CCNNGG 1 cut(s) 1227
BssMI GATC 3 cut(s) 609, 1102, 1126
BssT1I CCWWGG 1 cut(s) 1227
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 49, 236, 1181
Bst6I CTCTTC 3 cut(s) 315, 864, 1011
BstC8I GCNNGC 3 cut(s) 144, 148, 926
BstDEI CTNAG 9 cut(s) 53, 72, 585, 834, 929, 934, 1155, 1218, 1233
BstF5I GGATG 3 cut(s) 866, 916, 1135
BstKTI GATC 3 cut(s) 612, 1105, 1129
BstMBI GATC 3 cut(s) 609, 1102, 1126
BstMWI GCNNNNNNNGC 8 cut(s) 68, 82, 152, 529, 627, 804, 930, 1169
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 2 cut(s) 1041, 1088
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 1177
BstV1I GCAGC 9 cut(s) 74, 77, 80, 639, 809, 812, 1021, 1043, 1135
BstV2I GAAGAC 2 cut(s) 85, 353
Bsu15I ATCGAT 1 cut(s) 1129
BsuI GTATCC 2 cut(s) 638, 1210
BsuRI GGCC 4 cut(s) 228, 563, 1163, 1226
BsuTUI ATCGAT 1 cut(s) 1129
BtsCI GGATG 3 cut(s) 866, 916, 1135
BtsIMutI CAGTG 2 cut(s) 241, 1186
Cac8I GCNNGC 3 cut(s) 144, 148, 926
Cfr10I RCCGGY 2 cut(s) 142, 623
Cfr13I GGNCC 1 cut(s) 1187
ClaI ATCGAT 1 cut(s) 1129
Csp6I GTAC 3 cut(s) 80, 765, 955
CviAII CATG 3 cut(s) 949, 1038, 1085
CviQI GTAC 3 cut(s) 80, 765, 955
DdeI CTNAG 9 cut(s) 53, 72, 585, 834, 929, 934, 1155, 1218, 1233
DpnI GATC 3 cut(s) 611, 1104, 1128
DpnII GATC 3 cut(s) 609, 1102, 1126
EaeI YGGCCR 2 cut(s) 1161, 1224
Eam1104I CTCTTC 3 cut(s) 315, 864, 1011
EarI CTCTTC 3 cut(s) 315, 864, 1011
Eco130I CCWWGG 1 cut(s) 1227
Eco47I GGWCC 1 cut(s) 1187
Eco57I CTGAAG 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 1227
FaeI CATG 3 cut(s) 952, 1041, 1088
FatI CATG 3 cut(s) 948, 1037, 1084
FauNDI CATATG 1 cut(s) 973
FokI GGATG 3 cut(s) 873, 923, 1122
FspBI CTAG 2 cut(s) 26, 147
GsuI CTGGAG 2 cut(s) 369, 876
HaeIII GGCC 4 cut(s) 228, 563, 1163, 1226
HapII CCGG 4 cut(s) 143, 210, 253, 624
Hin1II CATG 3 cut(s) 952, 1041, 1088
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 3 cut(s) 107, 602, 712
HpaII CCGG 4 cut(s) 143, 210, 253, 624
HphI GGTGA 2 cut(s) 116, 736
Hpy166II GTNNAC 2 cut(s) 1079, 1187
Hpy188I TCNGA 6 cut(s) 297, 441, 644, 837, 937, 1102
Hpy188III TCNNGA 4 cut(s) 348, 365, 547, 903
Hpy8I GTNNAC 2 cut(s) 1079, 1187
HpyAV CCTTC 2 cut(s) 207, 715
HpyCH4III ACNGT 3 cut(s) 49, 236, 1181
HpyCH4V TGCA 4 cut(s) 887, 924, 1037, 1088
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 82, 152, 529, 627, 804, 930, 1169
HpyF3I CTNAG 9 cut(s) 53, 72, 585, 834, 929, 934, 1155, 1218, 1233
Hsp92II CATG 3 cut(s) 952, 1041, 1088
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 3 cut(s) 609, 1102, 1126
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 1 cut(s) 782
Lsp1109I GCAGC 9 cut(s) 74, 77, 80, 639, 809, 812, 1021, 1043, 1135
LweI GCATC 2 cut(s) 807, 901
MaeI CTAG 2 cut(s) 26, 147
MaeIII GTNAC 4 cut(s) 263, 392, 412, 724
MalI GATC 3 cut(s) 611, 1104, 1128
MboI GATC 3 cut(s) 609, 1102, 1126
MboII GAAGA 8 cut(s) 11, 85, 302, 331, 353, 604, 881, 998
MlsI TGGCCA 1 cut(s) 1226
MluCI AATT 6 cut(s) 533, 967, 1015, 1193, 1206, 1210
MluNI TGGCCA 1 cut(s) 1226
MmeI TCCRAC 1 cut(s) 1163
Mox20I TGGCCA 1 cut(s) 1226
MroNI GCCGGC 1 cut(s) 142
MscI TGGCCA 1 cut(s) 1226
MseI TTAA 7 cut(s) 231, 327, 419, 515, 597, 749, 1209
Msp20I TGGCCA 1 cut(s) 1226
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 4 cut(s) 143, 210, 253, 624
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 8 cut(s) 68, 82, 152, 529, 627, 804, 930, 1169
NaeI GCCGGC 1 cut(s) 144
NdeI CATATG 1 cut(s) 973
NdeII GATC 3 cut(s) 609, 1102, 1126
NgoMIV GCCGGC 1 cut(s) 142
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 3 cut(s) 952, 1041, 1088
NlaIV GGNNCC 3 cut(s) 127, 196, 481
NmuCI GTSAC 2 cut(s) 392, 724
NspI RCATGY 2 cut(s) 1041, 1088
PciSI GCTCTTC 1 cut(s) 864
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 107, 602, 712
PshBI ATTAAT 1 cut(s) 1209
PsiI TTATAA 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 127, 196, 481
PspPI GGNCC 1 cut(s) 1187
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 3 cut(s) 81, 766, 956
RsaNI GTAC 3 cut(s) 80, 765, 955
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 7 cut(s) 231, 327, 419, 515, 597, 749, 1209
Sau3AI GATC 3 cut(s) 609, 1102, 1126
Sau96I GGNCC 1 cut(s) 1187
ScaI AGTACT 2 cut(s) 81, 956
ScrFI CCNGG 1 cut(s) 192
SfaNI GCATC 2 cut(s) 807, 901
SfcI CTRYAG 1 cut(s) 1177
SinI GGWCC 1 cut(s) 1187
Sse9I AATT 6 cut(s) 533, 967, 1015, 1193, 1206, 1210
SsiI CCGC 2 cut(s) 575, 1164
SspI AATATT 2 cut(s) 469, 1115
SspMI CTAG 2 cut(s) 26, 147
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 3 cut(s) 49, 236, 1181
TaqI TCGA 1 cut(s) 1129
TasI AATT 6 cut(s) 533, 967, 1015, 1193, 1206, 1210
TatI WGTACW 3 cut(s) 79, 764, 954
TauI GCSGC 1 cut(s) 1166
TfiI GAWTC 3 cut(s) 107, 602, 712
Tru1I TTAA 7 cut(s) 231, 327, 419, 515, 597, 749, 1209
Tru9I TTAA 7 cut(s) 231, 327, 419, 515, 597, 749, 1209
TscAI CASTG 2 cut(s) 241, 1186
TseFI GTSAC 2 cut(s) 392, 724
TseI GCWGC 9 cut(s) 62, 65, 68, 627, 822, 825, 1031, 1034, 1148
Tsp45I GTSAC 2 cut(s) 392, 724
TspDTI ATGAA 9 cut(s) 85, 464, 528, 604, 887, 960, 965, 990, 1124
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 2 cut(s) 241, 1186
VpaK11BI GGWCC 1 cut(s) 1187
VspI ATTAAT 1 cut(s) 1209
XapI RAATTY 1 cut(s) 967
XceI RCATGY 2 cut(s) 1041, 1088
XspI CTAG 2 cut(s) 26, 147
ZrmI AGTACT 2 cut(s) 81, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.