FvH4_2g15990

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000448
Physical Location & Seq
Reverse (-)
13971290 .. 13973008
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15990.t1

Sequence Viewer

Length: 1125 bp
ATGGCAACCAAATGGGTTCTTCCTCTAATCCTATCCTTGTTTATAGCTGCTCTTAGTTTAGCAGCAGCAGCAAAGCCAGTGTTGCCACCAGTTTTCATACTGGGTGATTCAACTGCTGATATAGGGACCAATAACTACTTGCCAGGTAGCACGGCAAGGGCAGACTTTCCCCATAATGGCATTGACTTTCCTAACTCACCAAGAGCCACTGGAAGGTTCAGCAATGGCCTCAACAGTGCTGATTTTCTAGCCCGGCATTTTGGTTACAAGAGAAGTCCAAGGCCCTTTCTTTCTCTCAGTGCTACTTCTCTTCAAAAGAAGAAGTTCAGAGGTATTAACTTTGCTTCTGGAGGGTCTGGTCTTTTTGACTTAACTGGACAGATAGTGATGAACAGGAATGTTCCATTTGGTGCCTCACTCAACAACCAAAAGAATGTAGTCCCATTAACCGAGCAGATACAGCAATTTTCATCCGTCAAGAACAGTCTCACGGCCTTAATGGGTGCAGCAGCAACTAAGAAGTTTCTTTCGAAGTCTTTGATCTTCATCAGCATTGGAAGCAATGACCTTTTCAGATATTACCATTCAAACAGTTCCACTCCCAAGGAAAAGTTCTTGTCATCTTTACTATTTGCTTATGAGAACCACTTGAAGAATTTATACAACCTTGGAGCAAGAAAGTTTGGCATCATTAGCGTCGCCCCGATTGGCTGCTGTCCATCTCAAAGGATTTTCAATGCTACTGGGGGATGTTTGGAGGAGTTGAATGATCATGCAGTAGCCTTCCATTCAAAGCTGGATTCCCTCTTGTGCAAGCTCAGCACTGATTACGAAGGCTTTAAGTACTCCCTTGGAAATTCGTATGAAATGACAATGAACGTCATACAGAACCCTCTTCCATTCAATTTTACACAAGTGGAAGCTGCATGTTGTGGAGCTGGGAAGCTCAATGCTGAATCCTACTGCACACCAAATGCTAATCTTTGTTCAAACCGCGACCAATACTTGTTCTGGGATGTATTCCATCCATCGCAGGCGGCTTCGAAGTTGGCAGCTGTGACCCTCTACTATGGAGGACCAGAATATGTATCCCCAATTAACTTCGCTCAGTTAGCCGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

375

Amino Acids

40.7

Weight (kDa)

9.08

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 352 1.6e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 410
AccII CGCG 1 cut(s) 996
AciI CCGC 2 cut(s) 994, 1037
AcsI RAATTY 2 cut(s) 655, 856
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 2 cut(s) 176, 213
AgsI TTSAA 9 cut(s) 111, 314, 588, 652, 736, 766, 792, 904, 990
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AluBI AGCT 7 cut(s) 47, 796, 817, 923, 938, 946, 1055
AluI AGCT 7 cut(s) 47, 796, 817, 923, 938, 946, 1055
Alw26I GTCTC 1 cut(s) 491
AoxI GGCC 3 cut(s) 226, 281, 492
ApeKI GCWGC 9 cut(s) 47, 62, 65, 68, 506, 509, 711, 923, 1052
ApoI RAATTY 2 cut(s) 655, 856
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 126, 282, 1076
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 116, 189
AsuII TTCGAA 2 cut(s) 530, 1043
AvaII GGWCC 2 cut(s) 126, 1076
BanI GGYRCC 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
BbvI GCAGC 9 cut(s) 34, 74, 77, 80, 518, 521, 698, 910, 1064
BccI CCATC 3 cut(s) 727, 1032, 1036
BceAI ACGGC 2 cut(s) 168, 507
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 1099
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 1 cut(s) 248
BfuI GTATCC 1 cut(s) 1099
BlpI GCTNAGC 1 cut(s) 818
BmcAI AGTACT 1 cut(s) 845
Bme1390I CCNGG 2 cut(s) 144, 253
Bme18I GGWCC 2 cut(s) 126, 1076
BmgT120I GGNCC 3 cut(s) 126, 282, 1076
BmiI GGNNCC 2 cut(s) 127, 412
BmrFI CCNGG 2 cut(s) 144, 253
BmrI ACTGGG 2 cut(s) 110, 753
BmsI GCATC 1 cut(s) 696
BmuI ACTGGG 2 cut(s) 110, 753
BpmI CTGGAG 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 818
Bpu14I TTCGAA 2 cut(s) 530, 1043
BpuMI CCSGG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 545
BsaJI CCNNGG 5 cut(s) 278, 603, 667, 850, 1116
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 213
Bse1I ACTGG 6 cut(s) 77, 89, 105, 214, 379, 748
Bse3DI GCAATG 2 cut(s) 229, 568
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 5 cut(s) 278, 603, 667, 850, 1116
BseGI GGATG 4 cut(s) 470, 755, 1021, 1024
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 2 cut(s) 176, 213
BseMI GCAATG 2 cut(s) 229, 568
BseMII CTCAG 3 cut(s) 310, 832, 1121
BseNI ACTGG 6 cut(s) 77, 89, 105, 214, 379, 748
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 9 cut(s) 34, 74, 77, 80, 518, 521, 698, 910, 1064
BseYI CCCAGC 1 cut(s) 938
BsgI GTGCAG 2 cut(s) 525, 949
Bsh1236I CGCG 1 cut(s) 996
BshFI GGCC 3 cut(s) 228, 283, 494
BshNI GGYRCC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 2 cut(s) 139, 425
BslI CCNNNNNNNGG 2 cut(s) 176, 213
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 2 cut(s) 139, 425
BsnI GGCC 3 cut(s) 228, 283, 494
Bsp119I TTCGAA 2 cut(s) 530, 1043
Bsp143I GATC 2 cut(s) 540, 769
Bsp1720I GCTNAGC 1 cut(s) 818
BspACI CCGC 2 cut(s) 994, 1037
BspANI GGCC 3 cut(s) 228, 283, 494
BspCNI CTCAG 3 cut(s) 309, 831, 1120
BspFNI CGCG 1 cut(s) 996
BspLI GGNNCC 2 cut(s) 127, 412
BspT104I TTCGAA 2 cut(s) 530, 1043
BspT107I GGYRCC 1 cut(s) 410
BsrDI GCAATG 2 cut(s) 229, 568
BsrI ACTGG 6 cut(s) 77, 89, 105, 214, 379, 748
BssECI CCNNGG 5 cut(s) 278, 603, 667, 850, 1116
BssMI GATC 2 cut(s) 540, 769
BssT1I CCWWGG 4 cut(s) 278, 603, 667, 850
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 236, 485, 593
Bst6I CTCTTC 2 cut(s) 315, 900
BstBI TTCGAA 2 cut(s) 530, 1043
BstC8I GCNNGC 2 cut(s) 815, 1035
BstDEI CTNAG 6 cut(s) 53, 296, 516, 818, 1107, 1122
BstF5I GGATG 4 cut(s) 470, 755, 1021, 1024
BstFNI CGCG 1 cut(s) 996
BstKTI GATC 2 cut(s) 543, 772
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 2 cut(s) 540, 769
BstMWI GCNNNNNNNGC 7 cut(s) 68, 82, 460, 558, 693, 819, 1112
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 2 cut(s) 142, 251
BstUI CGCG 1 cut(s) 996
BstV1I GCAGC 9 cut(s) 34, 74, 77, 80, 518, 521, 698, 910, 1064
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 3 cut(s) 228, 283, 494
BtgZI GCGATG 1 cut(s) 1014
BtsCI GGATG 4 cut(s) 470, 755, 1021, 1024
BtsIMutI CAGTG 5 cut(s) 84, 207, 241, 304, 822
Cac8I GCNNGC 2 cut(s) 815, 1035
Cfr13I GGNCC 3 cut(s) 126, 282, 1076
CseI GACGC 1 cut(s) 685
Csp6I GTAC 1 cut(s) 844
CviAII CATG 2 cut(s) 773, 927
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 6 cut(s) 53, 296, 516, 818, 1107, 1122
DpnI GATC 2 cut(s) 542, 771
DpnII GATC 2 cut(s) 540, 769
Eam1104I CTCTTC 2 cut(s) 315, 900
EarI CTCTTC 2 cut(s) 315, 900
Eco130I CCWWGG 4 cut(s) 278, 603, 667, 850
Eco47I GGWCC 2 cut(s) 126, 1076
EcoO109I RGGNCCY 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 4 cut(s) 278, 603, 667, 850
ErhI CCWWGG 4 cut(s) 278, 603, 667, 850
FaeI CATG 2 cut(s) 776, 930
FaqI GGGAC 2 cut(s) 139, 425
FatI CATG 2 cut(s) 772, 926
FbaI TGATCA 1 cut(s) 769
FokI GGATG 4 cut(s) 457, 762, 1011, 1028
FspBI CTAG 1 cut(s) 248
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 3 cut(s) 228, 283, 494
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 685
Hin1II CATG 2 cut(s) 776, 930
HinfI GANTC 3 cut(s) 107, 800, 956
HpaII CCGG 1 cut(s) 253
HphI GGTGA 2 cut(s) 116, 189
Hpy188I TCNGA 2 cut(s) 329, 575
Hpy188III TCNNGA 2 cut(s) 348, 478
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 3 cut(s) 207, 793, 827
HpyCH4III ACNGT 3 cut(s) 236, 485, 593
HpyCH4IV ACGT 1 cut(s) 879
HpyCH4V TGCA 5 cut(s) 506, 776, 813, 926, 966
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 82, 460, 558, 693, 819, 1112
HpyF3I CTNAG 6 cut(s) 53, 296, 516, 818, 1107, 1122
HpySE526I ACGT 1 cut(s) 879
Hsp92II CATG 2 cut(s) 776, 930
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 2 cut(s) 540, 769
LmnI GCTCC 2 cut(s) 671, 935
Lsp1109I GCAGC 9 cut(s) 34, 74, 77, 80, 518, 521, 698, 910, 1064
LweI GCATC 1 cut(s) 696
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 879
MaeIII GTNAC 2 cut(s) 263, 1057
MalI GATC 2 cut(s) 542, 771
MboI GATC 2 cut(s) 540, 769
MboII GAAGA 6 cut(s) 11, 302, 331, 535, 664, 887
MluCI AATT 5 cut(s) 464, 655, 856, 904, 1095
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 6 cut(s) 336, 371, 446, 497, 840, 1098
MspA1I CMGCKG 1 cut(s) 1055
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 144, 253
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 996
MwoI GCNNNNNNNGC 7 cut(s) 68, 82, 460, 558, 693, 819, 1112
NciI CCSGG 1 cut(s) 253
NdeII GATC 2 cut(s) 540, 769
NlaIII CATG 2 cut(s) 776, 930
NlaIV GGNNCC 2 cut(s) 127, 412
NmuCI GTSAC 1 cut(s) 1057
NspI RCATGY 1 cut(s) 930
NspV TTCGAA 2 cut(s) 530, 1043
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 3 cut(s) 107, 800, 956
Psp6I CCWGG 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 127, 412
PspPI GGNCC 3 cut(s) 126, 282, 1076
PvuII CAGCTG 1 cut(s) 1055
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
SaqAI TTAA 6 cut(s) 336, 371, 446, 497, 840, 1098
Sau3AI GATC 2 cut(s) 540, 769
Sau96I GGNCC 3 cut(s) 126, 282, 1076
ScaI AGTACT 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 144, 253
SfaNI GCATC 1 cut(s) 696
SfuI TTCGAA 2 cut(s) 530, 1043
SinI GGWCC 2 cut(s) 126, 1076
Sse9I AATT 5 cut(s) 464, 655, 856, 904, 1095
SsiI CCGC 2 cut(s) 994, 1037
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 142, 251
StyI CCWWGG 4 cut(s) 278, 603, 667, 850
TaaI ACNGT 3 cut(s) 236, 485, 593
TaiI ACGT 1 cut(s) 882
TaqI TCGA 2 cut(s) 530, 1043
TasI AATT 5 cut(s) 464, 655, 856, 904, 1095
TatI WGTACW 1 cut(s) 843
TauI GCSGC 1 cut(s) 1040
TfiI GAWTC 3 cut(s) 107, 800, 956
Tru1I TTAA 6 cut(s) 336, 371, 446, 497, 840, 1098
Tru9I TTAA 6 cut(s) 336, 371, 446, 497, 840, 1098
TscAI CASTG 5 cut(s) 84, 214, 241, 304, 829
TseFI GTSAC 1 cut(s) 1057
TseI GCWGC 9 cut(s) 47, 62, 65, 68, 506, 509, 711, 923, 1052
Tsp45I GTSAC 1 cut(s) 1057
TspDTI ATGAA 6 cut(s) 85, 404, 459, 535, 879, 890
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 5 cut(s) 84, 214, 241, 304, 829
VpaK11BI GGWCC 2 cut(s) 126, 1076
XapI RAATTY 2 cut(s) 655, 856
XceI RCATGY 1 cut(s) 930
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.