Rroxscaffold_2G00144380

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000448
Physical Location & Seq
Reverse (-)
82278372 .. 82278645
274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144380.1

Sequence Viewer

Length: 183 bp
ATGTCCACTTTTAAAAGGGATATACTGTGGGGAGTCAACTTTGCTTCAGCAGGAAGCGGCATCTTCCAAGACACGGGAATAAAAAGATGGACAGAAGTTGTGTCACTGGGAAATCAGATCCAACAATTTGCAGCGGTGCGTGGAAATTTCACAGATCGAGATGGTTGGTTTCAAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

60

Amino Acids

6.78

Weight (kDa)

8.34

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 134
AclWI GGATC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 173
AlwI GGATC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 145
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 81, 155
BisI GCNGC 2 cut(s) 58, 132
BlsI GCNGC 2 cut(s) 59, 133
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 73
Bsp143I GATC 2 cut(s) 117, 154
BspACI CCGC 2 cut(s) 57, 134
BspPI GGATC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 111
BssMI GATC 2 cut(s) 117, 154
Bst4CI ACNGT 1 cut(s) 27
BstKTI GATC 2 cut(s) 120, 157
BstMBI GATC 2 cut(s) 117, 154
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 104
DpnI GATC 2 cut(s) 119, 156
DpnII GATC 2 cut(s) 117, 154
DraI TTTAAA 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 30
FaiI YATR 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 58, 132
Fsp4HI GCNGC 2 cut(s) 58, 132
GluI GCNGC 2 cut(s) 58, 132
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 33
Hpy166II GTNNAC 2 cut(s) 6, 37
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 6, 37
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 131
Kzo9I GATC 2 cut(s) 117, 154
LpnPI CCDG 2 cut(s) 36, 92
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 102
MalI GATC 2 cut(s) 119, 156
MboI GATC 2 cut(s) 117, 154
MboII GAAGA 1 cut(s) 55
MflI RGATCY 1 cut(s) 117
MluCI AATT 2 cut(s) 125, 145
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 145
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 134
NdeII GATC 2 cut(s) 117, 154
NmuCI GTSAC 1 cut(s) 102
PkrI GCNGC 2 cut(s) 59, 133
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PsuI RGATCY 1 cut(s) 117
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 58, 132
Sau3AI GATC 2 cut(s) 117, 154
SchI GAGTC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 69
SgeI CNNG 7 cut(s) 63, 80, 85, 87, 119, 152, 170
Sse9I AATT 2 cut(s) 125, 145
SsiI CCGC 2 cut(s) 57, 134
TaaI ACNGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 157
TasI AATT 2 cut(s) 125, 145
TauI GCSGC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 102
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.