Rw6G020440

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000448
Physical Location & Seq
Reverse (-)
40750922 .. 40752611
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020440.1

Sequence Viewer

Length: 1068 bp
ATGGCTGTTCTTAGTTCAGCAGCAGCAGCTAAGCCAGTACTATTGCCACCAATTTTCATACTAGGTGATTCAACTGCTGATATAGGAACCAATAACTTCATGCCAGGTAGCAAGGCAAGGGCAGACTTTCCCCACAATGGCATTGACTTTCCTAACTCACCAAGACCCACTGGAAGGTTCAGCAATGGCCTCAACAGTGCTGATTTTCTAGCCCAGCATTTTGGTTACAAGAGAAGTCCAAGGCCCTTTCTTTCTCTCAGTGCTACTTCTCTTCAAAAGAAGAATTTCAGAGGTATTAATATGCTTCTGGAGGGTCTGGTGAATGTTATTGGTGCCTCATTCAACAACAACCAAAAAAATGTTATCCCATTAACAGAACAGATACGGCAATTGTCATCCGTCAAGAACAATGTCACGGCCAAAATGGGTGCAGCAGCAACTGAGAAGTTTCTTTTGAAGTCTTTGATCTTCACCAGCAGTGGAAGCAATGACCTTTTCGGATATTATCATTCAAACAGTTCAATTCCCAAAGAAGAATTCTTGTCATCTTTAGTACTTGCTTATGAGAACCACTTGAAGACTTTATACAGTCTTGGAGCAAGGAAGTTTGGAATCTTTAGCGTCGCCCCGATTGGCTGCTGCCCATCTCAAAGGATTTTCAATGCTACGGGGGATGTTTGGAGGACTGGATCCCTATTGTGCAAGCTCAGCACCGAACATGAAGGCTTTAAGTACTCCCTTGGAAATTCATATGAAATGACAATAAACGTCATACACAACCCTCTTCCATTCAATAAGCAACTAGTAAATAATGAAGTCATAATGCTTAACACTTTGTCATGCATGTATTTTACACAAGTGGAAGCTGCATGTTGTGGAGCTGGGAAGCTCGGTGGTGAACCCTTCTGTACACCAGATGCTAATCTTTGTTCGAACCGCGACCAATACTTGTTCTGGGATCTATTCCATCCAACACAGGCGGCTTCTAAGTTGGCAGCTGTGACCCTCTACTGTGGAGGACCACAATTTGTATCCCCAATTAACTTCGCTCAGTTACCCAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

355

Amino Acids

38.66

Weight (kDa)

8.99

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 18 - 333 8e-20 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccII CGCG 1 cut(s) 939
AciI CCGC 2 cut(s) 937, 980
AclWI GGATC 3 cut(s) 684, 697, 966
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 3 cut(s) 283, 536, 745
AfaI GTAC 4 cut(s) 39, 555, 734, 910
AfiI CCNNNNNNNGG 2 cut(s) 137, 174
AgsI TTSAA 9 cut(s) 72, 275, 343, 457, 513, 522, 577, 661, 793
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AluBI AGCT 6 cut(s) 29, 706, 866, 881, 889, 998
AluI AGCT 6 cut(s) 29, 706, 866, 881, 889, 998
AlwI GGATC 3 cut(s) 684, 697, 966
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 3 cut(s) 187, 242, 417
ApeKI GCWGC 9 cut(s) 20, 23, 26, 431, 434, 636, 639, 866, 995
ApoI RAATTY 3 cut(s) 283, 536, 745
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 243, 1019
AsuHPI GGTGA 5 cut(s) 77, 150, 331, 463, 908
AsuII TTCGAA 1 cut(s) 932
AvaII GGWCC 1 cut(s) 1019
BamHI GGATCC 1 cut(s) 689
BanI GGYRCC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 569, 601
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 9 cut(s) 32, 35, 38, 443, 446, 623, 626, 853, 1007
BccI CCATC 2 cut(s) 652, 975
BceAI ACGGC 2 cut(s) 401, 432
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 1042
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 3 cut(s) 62, 209, 803
BfuI GTATCC 1 cut(s) 1042
BlpI GCTNAGC 2 cut(s) 30, 707
BmcAI AGTACT 3 cut(s) 39, 555, 734
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 1019
BmgT120I GGNCC 2 cut(s) 243, 1019
BmiI GGNNCC 3 cut(s) 88, 334, 691
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 907
BpiI GAAGAC 1 cut(s) 584
BpmI CTGGAG 1 cut(s) 329
Bpu1102I GCTNAGC 2 cut(s) 30, 707
Bpu14I TTCGAA 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 3 cut(s) 239, 739, 1059
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 174
Bse1I ACTGG 3 cut(s) 35, 175, 691
Bse3DI GCAATG 2 cut(s) 190, 493
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 239, 739, 1059
BseGI GGATG 3 cut(s) 395, 679, 967
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 2 cut(s) 137, 174
BseMI GCAATG 2 cut(s) 190, 493
BseMII CTCAG 4 cut(s) 271, 432, 721, 1064
BseNI ACTGG 3 cut(s) 35, 175, 691
BseXI GCAGC 9 cut(s) 32, 35, 38, 443, 446, 623, 626, 853, 1007
BseYI CCCAGC 2 cut(s) 213, 881
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 939
BshFI GGCC 3 cut(s) 189, 244, 419
BshNI GGYRCC 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 137, 174
BsnI GGCC 3 cut(s) 189, 244, 419
Bsp119I TTCGAA 1 cut(s) 932
Bsp1407I TGTACA 1 cut(s) 908
Bsp143I GATC 3 cut(s) 465, 689, 958
Bsp1720I GCTNAGC 2 cut(s) 30, 707
BspACI CCGC 2 cut(s) 937, 980
BspANI GGCC 3 cut(s) 189, 244, 419
BspCNI CTCAG 4 cut(s) 270, 433, 720, 1063
BspFNI CGCG 1 cut(s) 939
BspLI GGNNCC 3 cut(s) 88, 334, 691
BspPI GGATC 3 cut(s) 684, 697, 966
BspT104I TTCGAA 1 cut(s) 932
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 190, 493
BsrGI TGTACA 1 cut(s) 908
BsrI ACTGG 3 cut(s) 35, 175, 691
BssECI CCNNGG 3 cut(s) 239, 739, 1059
BssMI GATC 3 cut(s) 465, 689, 958
BssT1I CCWWGG 3 cut(s) 239, 739, 1059
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 4 cut(s) 197, 518, 590, 1013
Bst6I CTCTTC 2 cut(s) 276, 789
BstAUI TGTACA 1 cut(s) 908
BstBI TTCGAA 1 cut(s) 932
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 7 cut(s) 11, 30, 257, 441, 707, 987, 1050
BstF5I GGATG 3 cut(s) 395, 679, 967
BstFNI CGCG 1 cut(s) 939
BstKTI GATC 3 cut(s) 468, 692, 961
BstMBI GATC 3 cut(s) 465, 689, 958
BstMWI GCNNNNNNNGC 3 cut(s) 26, 483, 708
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 2 cut(s) 847, 873
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 1 cut(s) 939
BstV1I GCAGC 9 cut(s) 32, 35, 38, 443, 446, 623, 626, 853, 1007
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 2 cut(s) 689, 958
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 2 cut(s) 689, 958
BsuI GTATCC 1 cut(s) 1042
BsuRI GGCC 3 cut(s) 189, 244, 419
BtsCI GGATG 3 cut(s) 395, 679, 967
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 4 cut(s) 168, 202, 265, 484
Cac8I GCNNGC 1 cut(s) 704
CaiI CAGNNNCTG 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 243, 1019
CseI GACGC 1 cut(s) 610
Csp6I GTAC 4 cut(s) 38, 554, 733, 909
CviAII CATG 5 cut(s) 100, 719, 840, 844, 870
CviQI GTAC 4 cut(s) 38, 554, 733, 909
DdeI CTNAG 7 cut(s) 11, 30, 257, 441, 707, 987, 1050
DpnI GATC 3 cut(s) 467, 691, 960
DpnII GATC 3 cut(s) 465, 689, 958
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 276, 789
EarI CTCTTC 2 cut(s) 276, 789
Eco130I CCWWGG 3 cut(s) 239, 739, 1059
Eco47I GGWCC 1 cut(s) 1019
EcoO109I RGGNCCY 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 3 cut(s) 239, 739, 1059
EcoT22I ATGCAT 1 cut(s) 845
ErhI CCWWGG 3 cut(s) 239, 739, 1059
FaeI CATG 5 cut(s) 103, 722, 843, 847, 873
FatI CATG 5 cut(s) 99, 718, 839, 843, 869
FauNDI CATATG 1 cut(s) 751
FokI GGATG 3 cut(s) 382, 686, 954
FspBI CTAG 3 cut(s) 62, 209, 803
GsaI CCCAGC 2 cut(s) 217, 885
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 3 cut(s) 189, 244, 419
HgaI GACGC 1 cut(s) 610
Hin1II CATG 5 cut(s) 103, 722, 843, 847, 873
HinfI GANTC 2 cut(s) 68, 612
HphI GGTGA 5 cut(s) 77, 150, 331, 463, 908
Hpy166II GTNNAC 2 cut(s) 899, 911
Hpy188I TCNGA 2 cut(s) 290, 500
Hpy188III TCNNGA 2 cut(s) 308, 403
Hpy8I GTNNAC 2 cut(s) 899, 911
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 3 cut(s) 168, 716, 913
HpyCH4III ACNGT 4 cut(s) 197, 518, 590, 1013
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 4 cut(s) 431, 702, 843, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 483, 708
HpyF3I CTNAG 7 cut(s) 11, 30, 257, 441, 707, 987, 1050
HpySE526I ACGT 1 cut(s) 768
Hsp92II CATG 5 cut(s) 103, 722, 843, 847, 873
Kzo9I GATC 3 cut(s) 465, 689, 958
LmnI GCTCC 2 cut(s) 596, 878
Lsp1109I GCAGC 9 cut(s) 32, 35, 38, 443, 446, 623, 626, 853, 1007
LweI GCATC 1 cut(s) 907
MaeI CTAG 3 cut(s) 62, 209, 803
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 4 cut(s) 224, 412, 1000, 1053
MalI GATC 3 cut(s) 467, 691, 960
MboI GATC 3 cut(s) 465, 689, 958
MboII GAAGA 6 cut(s) 263, 292, 460, 545, 589, 776
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 2 cut(s) 689, 958
MluCI AATT 8 cut(s) 51, 283, 389, 522, 536, 745, 1025, 1038
MmeI TCCRAC 1 cut(s) 995
MnlI CCTC 8 cut(s) 200, 284, 304, 346, 675, 792, 1010, 1016
Mph1103I ATGCAT 1 cut(s) 845
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 6 cut(s) 297, 371, 729, 828, 1041, 1066
MspA1I CMGCKG 1 cut(s) 998
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 939
MwoI GCNNNNNNNGC 3 cut(s) 26, 483, 708
NdeI CATATG 1 cut(s) 751
NdeII GATC 3 cut(s) 465, 689, 958
NlaIII CATG 5 cut(s) 103, 722, 843, 847, 873
NlaIV GGNNCC 3 cut(s) 88, 334, 691
NmuCI GTSAC 2 cut(s) 412, 1000
NsiI ATGCAT 1 cut(s) 845
NspI RCATGY 2 cut(s) 847, 873
NspV TTCGAA 1 cut(s) 932
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 68, 612
PshBI ATTAAT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 2 cut(s) 213, 881
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 88, 334, 691
PspPI GGNCC 2 cut(s) 243, 1019
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 689, 958
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 4 cut(s) 39, 555, 734, 910
RsaNI GTAC 4 cut(s) 38, 554, 733, 909
SaqAI TTAA 6 cut(s) 297, 371, 729, 828, 1041, 1066
Sau3AI GATC 3 cut(s) 465, 689, 958
Sau96I GGNCC 2 cut(s) 243, 1019
ScaI AGTACT 3 cut(s) 39, 555, 734
ScrFI CCNGG 1 cut(s) 105
SfaNI GCATC 1 cut(s) 907
SfuI TTCGAA 1 cut(s) 932
SinI GGWCC 1 cut(s) 1019
SpeI ACTAGT 1 cut(s) 802
Sse9I AATT 8 cut(s) 51, 283, 389, 522, 536, 745, 1025, 1038
SsiI CCGC 2 cut(s) 937, 980
SspMI CTAG 3 cut(s) 62, 209, 803
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 3 cut(s) 239, 739, 1059
TaaI ACNGT 4 cut(s) 197, 518, 590, 1013
TaiI ACGT 1 cut(s) 771
TaqI TCGA 1 cut(s) 932
TasI AATT 8 cut(s) 51, 283, 389, 522, 536, 745, 1025, 1038
TatI WGTACW 4 cut(s) 37, 553, 732, 908
TauI GCSGC 1 cut(s) 983
TfiI GAWTC 2 cut(s) 68, 612
Tru1I TTAA 6 cut(s) 297, 371, 729, 828, 1041, 1066
Tru9I TTAA 6 cut(s) 297, 371, 729, 828, 1041, 1066
TscAI CASTG 4 cut(s) 175, 202, 265, 484
TseFI GTSAC 2 cut(s) 412, 1000
TseI GCWGC 9 cut(s) 20, 23, 26, 431, 434, 636, 639, 866, 995
Tsp45I GTSAC 2 cut(s) 412, 1000
TspDTI ATGAA 6 cut(s) 46, 88, 735, 738, 768, 828
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 4 cut(s) 175, 202, 265, 484
VpaK11BI GGWCC 1 cut(s) 1019
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 3 cut(s) 283, 536, 745
XceI RCATGY 2 cut(s) 847, 873
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 3 cut(s) 62, 209, 803
ZrmI AGTACT 3 cut(s) 39, 555, 734
Zsp2I ATGCAT 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.