RLG00000013140

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000448
Physical Location & Seq
Forward (+)
26704180 .. 26705879
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013140

Sequence Viewer

Length: 1167 bp
ATGGAAAACAAATGGGTTCTTCCTCTAGCCCTATCCTTGTTTATAACTGTTCTTAGCTTGGCAGCAGCAGCTAAGCCAGTACTGCCACCAGTCTTCATATTTGGTGATTCAACAGCAGATGTCGGCACCAATAACTTCTTGCCGGCTAGCAAGGCAAGAGCTGACTTTCCCCCCAATGGCATTGACTTTCCTCCCACCTCAAAACCCACCGGAAGGTTCAGCAATGGCCTTAACAGTGCTGATTTTCTTGCCCAGCATTTTGGTTACAAGAGAAGTCCAAGCCCCTTTCTTTCTCTGAAAACTACTTCTCTTCAAAAGAAGAAGTTTAATGGTATCAACTTTGCTTCTGGAGGATCTGGTCTTCTTGACATAACTGGACGGACAATGGCAAGTCACTTTCTTGGGGAACAACTGACGTTGATGAAGTTTGGAACTGGAAATATTCCATTTGGTGCCTCATTCAAAAACCAGAAAAATGTTATCTCATTAACAGAGCAGATACAGCAATTTTCATCTGTCAAGAACAATCTTACGGCCTTGATGGGTGCGGTAGCAACTGAGAAATTTCTTAAAGAGTCTTTGATCTTCATCAGCACCGGCAGCAATGACCTTTTCGGATACTACCATTCAAAGAGTTCCATTCCGAAGGAAAAGTTCTTGTCCTCTTTAGAAGTAGCTTATGAGAATCACTTGAAGACTCTATACAATCTTGGAGCAAGGAAATTTGGCATCATCAGCATTGCCCCGATTGGCTGCTGCCCATCTCAGAGGATTTTCAATGCTACTGGGGGATGTTTGGAAGAGCTGAATGATAATGCAATAGCTTTTCATTCAAGATTGGATGCCCTCTTGTGCAAGCTTAGCTCAGAATACAAGGGCATGAAGTACTCGCTTGGAAATTCATATGAAATGACAATCAATGTCATACAAAACCCTCTTCCATTCAATTTTACACAAGTGGCAGCTGCATGTTGTGGAACTGGGAAGCTCAATGCTGAAAACTTCTGTAAACCAGATGCAAATCTCTGTTCGGATCGCAATCAATACTTGTTCTGGGATCGATTTCATCCAACACAGGCTGCTTCTAAGTTGGCTGCTGTTGCCCTCTACAGTGGTGGACCACAATTTGTATCCCCAATTAATTTTTCTCAGTTGGCCAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

389

Amino Acids

42.13

Weight (kDa)

9.2

Isoelectric Point (pI)

24.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 366 1.2e-30 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AccB1I GGYRCC 2 cut(s) 125, 452
AciI CCGC 1 cut(s) 548
AclWI GGATC 3 cut(s) 361, 1041, 1065
AcoI YGGCCR 1 cut(s) 1155
AcsI RAATTY 3 cut(s) 563, 722, 898
AfaI GTAC 2 cut(s) 81, 887
AfiI CCNNNNNNNGG 2 cut(s) 176, 213
AgsI TTSAA 8 cut(s) 111, 314, 463, 630, 694, 778, 834, 946
AjuI GAANNNNNNNTTGG 2 cut(s) 1129, 1161
AlwI GGATC 3 cut(s) 361, 1041, 1065
AoxI GGCC 3 cut(s) 226, 534, 1155
ApoI RAATTY 3 cut(s) 563, 722, 898
AseI ATTAAT 1 cut(s) 1140
AspS9I GGNCC 1 cut(s) 1118
AsuHPI GGTGA 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 1118
BalI TGGCCA 1 cut(s) 1157
BanI GGYRCC 2 cut(s) 125, 452
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BbsI GAAGAC 3 cut(s) 85, 353, 701
BccI CCATC 2 cut(s) 535, 769
BceAI ACGGC 1 cut(s) 549
BciVI GTATCC 2 cut(s) 611, 1141
BfaI CTAG 2 cut(s) 26, 147
BfmI CTRYAG 1 cut(s) 1108
BfuI GTATCC 2 cut(s) 611, 1141
BlpI GCTNAGC 2 cut(s) 72, 860
BmcAI AGTACT 2 cut(s) 81, 887
Bme18I GGWCC 1 cut(s) 1118
BmgT120I GGNCC 1 cut(s) 1118
BmiI GGNNCC 2 cut(s) 127, 454
BmrI ACTGGG 2 cut(s) 795, 990
BmsI GCATC 3 cut(s) 738, 832, 1006
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 2 cut(s) 795, 990
BpiI GAAGAC 3 cut(s) 85, 353, 701
BpmI CTGGAG 1 cut(s) 369
Bpu1102I GCTNAGC 2 cut(s) 72, 860
Bsa29I ATCGAT 1 cut(s) 1060
BsaBI GATNNNNATC 3 cut(s) 587, 1020, 1038
BsaJI CCNNGG 1 cut(s) 1158
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 213
Bse118I RCCGGY 2 cut(s) 142, 596
Bse1I ACTGG 6 cut(s) 77, 89, 379, 439, 790, 985
Bse3DI GCAATG 3 cut(s) 229, 610, 738
Bse8I GATNNNNATC 3 cut(s) 587, 1020, 1038
BseCI ATCGAT 1 cut(s) 1060
BseDI CCNNGG 1 cut(s) 1158
BseGI GGATG 3 cut(s) 797, 847, 1066
BseJI GATNNNNATC 3 cut(s) 587, 1020, 1038
BseLI CCNNNNNNNGG 2 cut(s) 176, 213
BseMI GCAATG 3 cut(s) 229, 610, 738
BseMII CTCAG 4 cut(s) 549, 779, 879, 1163
BseNI ACTGG 6 cut(s) 77, 89, 379, 439, 790, 985
BseYI CCCAGC 1 cut(s) 252
BshFI GGCC 3 cut(s) 228, 536, 1157
BshNI GGYRCC 2 cut(s) 125, 452
BshVI ATCGAT 1 cut(s) 1060
BsiSI CCGG 3 cut(s) 143, 210, 597
BslI CCNNNNNNNGG 2 cut(s) 176, 213
BsnI GGCC 3 cut(s) 228, 536, 1157
Bsp143I GATC 4 cut(s) 353, 582, 1033, 1057
Bsp1720I GCTNAGC 2 cut(s) 72, 860
BspACI CCGC 1 cut(s) 548
BspANI GGCC 3 cut(s) 228, 536, 1157
BspCNI CTCAG 4 cut(s) 550, 778, 878, 1162
BspDI ATCGAT 1 cut(s) 1060
BspLI GGNNCC 2 cut(s) 127, 454
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 3 cut(s) 361, 1041, 1065
BspQI GCTCTTC 1 cut(s) 795
BspT107I GGYRCC 2 cut(s) 125, 452
BsrDI GCAATG 3 cut(s) 229, 610, 738
BsrFI RCCGGY 2 cut(s) 142, 596
BsrI ACTGG 6 cut(s) 77, 89, 379, 439, 790, 985
BssAI RCCGGY 2 cut(s) 142, 596
BssECI CCNNGG 1 cut(s) 1158
BssMI GATC 4 cut(s) 353, 582, 1033, 1057
BssT1I CCWWGG 1 cut(s) 1158
Bst4CI ACNGT 3 cut(s) 49, 236, 1112
Bst6I CTCTTC 3 cut(s) 315, 795, 942
BstC8I GCNNGC 3 cut(s) 144, 148, 857
BstDEI CTNAG 9 cut(s) 53, 72, 558, 765, 860, 865, 1086, 1149, 1164
BstF5I GGATG 3 cut(s) 797, 847, 1066
BstKTI GATC 4 cut(s) 356, 585, 1036, 1060
BstMBI GATC 4 cut(s) 353, 582, 1033, 1057
BstMWI GCNNNNNNNGC 8 cut(s) 68, 82, 152, 502, 600, 735, 861, 1100
BstNSI RCATGY 1 cut(s) 972
BstSFI CTRYAG 1 cut(s) 1108
BstV2I GAAGAC 3 cut(s) 85, 353, 701
BstX2I RGATCY 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 1060
BsuI GTATCC 2 cut(s) 611, 1141
BsuRI GGCC 3 cut(s) 228, 536, 1157
BsuTUI ATCGAT 1 cut(s) 1060
BtsCI GGATG 3 cut(s) 797, 847, 1066
BtsIMutI CAGTG 2 cut(s) 241, 1117
Cac8I GCNNGC 3 cut(s) 144, 148, 857
Cfr10I RCCGGY 2 cut(s) 142, 596
Cfr13I GGNCC 1 cut(s) 1118
ClaI ATCGAT 1 cut(s) 1060
Csp6I GTAC 2 cut(s) 80, 886
CviAII CATG 2 cut(s) 880, 969
CviQI GTAC 2 cut(s) 80, 886
DdeI CTNAG 9 cut(s) 53, 72, 558, 765, 860, 865, 1086, 1149, 1164
DpnI GATC 4 cut(s) 355, 584, 1035, 1059
DpnII GATC 4 cut(s) 353, 582, 1033, 1057
EaeI YGGCCR 1 cut(s) 1155
Eam1104I CTCTTC 3 cut(s) 315, 795, 942
EarI CTCTTC 3 cut(s) 315, 795, 942
Eco130I CCWWGG 1 cut(s) 1158
Eco47I GGWCC 1 cut(s) 1118
EcoT14I CCWWGG 1 cut(s) 1158
ErhI CCWWGG 1 cut(s) 1158
FaeI CATG 2 cut(s) 883, 972
FatI CATG 2 cut(s) 879, 968
FauNDI CATATG 1 cut(s) 904
FokI GGATG 3 cut(s) 804, 854, 1053
FspBI CTAG 2 cut(s) 26, 147
GsaI CCCAGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 3 cut(s) 228, 536, 1157
HapII CCGG 3 cut(s) 143, 210, 597
Hin1II CATG 2 cut(s) 883, 972
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 4 cut(s) 107, 575, 685, 697
HpaII CCGG 3 cut(s) 143, 210, 597
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 1010, 1118
Hpy188I TCNGA 6 cut(s) 297, 617, 645, 768, 868, 1033
Hpy188III TCNNGA 4 cut(s) 348, 365, 520, 834
Hpy8I GTNNAC 2 cut(s) 1010, 1118
HpyAV CCTTC 2 cut(s) 207, 640
HpyCH4III ACNGT 3 cut(s) 49, 236, 1112
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 4 cut(s) 818, 855, 968, 1019
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 82, 152, 502, 600, 735, 861, 1100
HpyF3I CTNAG 9 cut(s) 53, 72, 558, 765, 860, 865, 1086, 1149, 1164
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 2 cut(s) 883, 972
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 353, 582, 1033, 1057
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 1 cut(s) 713
LweI GCATC 3 cut(s) 738, 832, 1006
MaeI CTAG 2 cut(s) 26, 147
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 263, 392
MalI GATC 4 cut(s) 355, 584, 1035, 1059
MboI GATC 4 cut(s) 353, 582, 1033, 1057
MboII GAAGA 9 cut(s) 11, 85, 302, 331, 353, 577, 706, 812, 929
MflI RGATCY 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 1157
MluCI AATT 8 cut(s) 506, 563, 722, 898, 946, 1124, 1137, 1141
MluNI TGGCCA 1 cut(s) 1157
MlyI GAGTC 2 cut(s) 584, 691
MmeI TCCRAC 1 cut(s) 1094
Mox20I TGGCCA 1 cut(s) 1157
MroNI GCCGGC 1 cut(s) 142
MscI TGGCCA 1 cut(s) 1157
MseI TTAA 5 cut(s) 231, 327, 488, 570, 1140
Msp20I TGGCCA 1 cut(s) 1157
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 3 cut(s) 143, 210, 597
MwoI GCNNNNNNNGC 8 cut(s) 68, 82, 152, 502, 600, 735, 861, 1100
NaeI GCCGGC 1 cut(s) 144
NdeI CATATG 1 cut(s) 904
NdeII GATC 4 cut(s) 353, 582, 1033, 1057
NgoMIV GCCGGC 1 cut(s) 142
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 883, 972
NlaIV GGNNCC 2 cut(s) 127, 454
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 795
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 107, 685
PleI GAGTC 2 cut(s) 583, 691
PpsI GAGTC 2 cut(s) 583, 691
PshBI ATTAAT 1 cut(s) 1140
PsiI TTATAA 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 127, 454
PspPI GGNCC 1 cut(s) 1118
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 2 cut(s) 81, 887
RsaNI GTAC 2 cut(s) 80, 886
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 5 cut(s) 231, 327, 488, 570, 1140
Sau3AI GATC 4 cut(s) 353, 582, 1033, 1057
Sau96I GGNCC 1 cut(s) 1118
ScaI AGTACT 2 cut(s) 81, 887
SchI GAGTC 2 cut(s) 584, 691
SfaNI GCATC 3 cut(s) 738, 832, 1006
SfcI CTRYAG 1 cut(s) 1108
SinI GGWCC 1 cut(s) 1118
Sse9I AATT 8 cut(s) 506, 563, 722, 898, 946, 1124, 1137, 1141
SsiI CCGC 1 cut(s) 548
SspI AATATT 1 cut(s) 442
SspMI CTAG 2 cut(s) 26, 147
StyI CCWWGG 1 cut(s) 1158
TaaI ACNGT 3 cut(s) 49, 236, 1112
TaiI ACGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 1060
TasI AATT 8 cut(s) 506, 563, 722, 898, 946, 1124, 1137, 1141
TatI WGTACW 2 cut(s) 79, 885
TfiI GAWTC 2 cut(s) 107, 685
Tru1I TTAA 5 cut(s) 231, 327, 488, 570, 1140
Tru9I TTAA 5 cut(s) 231, 327, 488, 570, 1140
TscAI CASTG 2 cut(s) 241, 1117
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 9 cut(s) 85, 437, 501, 577, 818, 891, 896, 921, 1055
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 2 cut(s) 241, 1117
VpaK11BI GGWCC 1 cut(s) 1118
VspI ATTAAT 1 cut(s) 1140
XapI RAATTY 3 cut(s) 563, 722, 898
XceI RCATGY 1 cut(s) 972
XspI CTAG 2 cut(s) 26, 147
ZrmI AGTACT 2 cut(s) 81, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.