RLG00000016752

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000448
Physical Location & Seq
Forward (+)
9726855 .. 9729077
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016752

Sequence Viewer

Length: 1155 bp
ATGGCAAAGGCAGCTAATCTGTTGCTCTGTGTTTCGTCATTTTCTTTCTTAGTTATCTTTCATACTTCTCTGGTCGTACTCGTAGCCGTTACTAATGCAGATGATCAGGTGGCTCCTAAACCTGCAGCTATTTTCATATTTGGAGACTCGACTGTGGATGTTGGCACCAACCACTTCTTGAACAATAGTTATTCGAGAGCTGATTTCTCTCCCAATGGAGTTGATTTTCCTTATTCTGTTCCGACGGGGAGGTTTAGTAATGGCCTTAACAGCGCTGACCAAATTGTAAGACTATTTGGGTACAAGAGAAGTCCGCAACCATTCTTGTATTCTCTGAACCATCAATCCACTTTCAAAAGAGATATACTGCAGGGAGTTAATTTTGCATCAGGAGGATCCGGCATATTCAACCAAACAGGAAAAAAGGACTATGGAGAAGTTGTGCCACTGGGAGATCAGGTCAAACAATTTGCGACGGTTCGTGGAAATATCACAGAACTAATTGGTCTTGGGGCAACTGAGATAATGTTTTCCAAGTCTTTGTTCGTTATTAGTATAGGAAGCAATGACCTGTTCGAGTTAGTGAATTGGTATCCAAATATCACTTCCTTGGCTAAGGATGAGTACTTGGAAACTCTTAAACTCAACTACAGTAACCATCTGAAGGACTTATACAATCTGGGAGCTAGAAAATTCGGGATTATAAGTGTTCCTCCAATTGGATGCTGTCCTGCTGCACGTGTTGGACCAAAATCGAATGACTCCAGTGTTTGTGTAGAGGAACTAAACAATCTTGCCTTAACATTTCTTGCAAAAACTGAGGATCTCCTCCAAAAATTGAGCTCAGAGTTGAAAGGACTCATGTACTCTCTTGGAAATGCTTATGAAATGACTATGAGTATGCTTGAAGACCCATTAGCATTTGGCTTCAAGGACACTCAATCAGCCTGCTGTGGGTCAGGAAAGTTAAATGGAGTGTTTCCTTGCTTCTTCTTGCTCAGTCCCAACCTTTGTCCGAATCGGCGGGAGGTTCTGTTCTGGGATTTGTATCATCCTACGGAATATGCTTCCGAGCTAGCAGCACTAACCCTTTATGGTGGAGGAACAAGATACGTCACACCTATAAACTTTAGTCGGTTAGTGGCTATAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

385

Amino Acids

42.07

Weight (kDa)

6.23

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 361 2.6e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 164
AciI CCGC 2 cut(s) 314, 1024
AclWI GGATC 3 cut(s) 390, 403, 831
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 683
AcvI CACGTG 1 cut(s) 740
AfaI GTAC 4 cut(s) 78, 302, 626, 866
AfeI AGCGCT 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 664, 719, 954
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 6 cut(s) 181, 355, 409, 853, 908, 931
AjuI GAANNNNNNNTTGG 4 cut(s) 527, 559, 589, 621
AloI GAACNNNNNNTCC 4 cut(s) 329, 361, 1019, 1051
AluBI AGCT 6 cut(s) 14, 128, 200, 686, 843, 1075
AluI AGCT 6 cut(s) 14, 128, 200, 686, 843, 1075
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 390, 403, 831
Aor51HI AGCGCT 1 cut(s) 274
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 4 cut(s) 11, 125, 734, 1079
ApoI RAATTY 1 cut(s) 692
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 746
AsuNHI GCTAGC 1 cut(s) 1075
AvaII GGWCC 1 cut(s) 746
BamHI GGATCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 845
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BbrPI CACGTG 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 915
Bbv12I GWGCWC 1 cut(s) 845
BbvI GCAGC 4 cut(s) 23, 137, 721, 1091
BccI CCATC 2 cut(s) 348, 666
BceAI ACGGC 1 cut(s) 71
BciVI GTATCC 1 cut(s) 603
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 687, 1076
BfmI CTRYAG 3 cut(s) 123, 368, 649
BfoI RGCGCY 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 4 cut(s) 12, 126, 735, 1080
BlsI GCNGC 4 cut(s) 13, 127, 736, 1081
BmcAI AGTACT 1 cut(s) 626
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 3 cut(s) 114, 166, 397
BmrI ACTGGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 395, 713
BmtI GCTAGC 1 cut(s) 1079
BmuI ACTGGG 1 cut(s) 458
BpiI GAAGAC 1 cut(s) 915
BpmI CTGGAG 1 cut(s) 748
Bpu10I CCTNAGC 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 1 cut(s) 1047
BsaJI CCNNGG 1 cut(s) 609
BsaXI ACNNNNNCTCC 8 cut(s) 241, 271, 426, 444, 456, 474, 1019, 1049
Bsc4I CCNNNNNNNGG 3 cut(s) 664, 719, 954
Bse1I ACTGG 2 cut(s) 453, 765
Bse3DI GCAATG 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 1047
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 4 cut(s) 163, 625, 728, 1051
BseJI GATNNNNATC 1 cut(s) 1047
BseLI CCNNNNNNNGG 3 cut(s) 664, 719, 954
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 4 cut(s) 510, 810, 858, 1012
BseNI ACTGG 2 cut(s) 453, 765
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 4 cut(s) 23, 137, 721, 1091
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 845
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 987
BslI CCNNNNNNNGG 3 cut(s) 664, 719, 954
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 987
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 845
Bsp143I GATC 4 cut(s) 103, 395, 454, 823
BspACI CCGC 2 cut(s) 314, 1024
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 4 cut(s) 511, 811, 857, 1011
BspLI GGNNCC 3 cut(s) 114, 166, 397
BspMAI CTGCAG 2 cut(s) 127, 372
BspMI ACCTGC 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 1079
BspPI GGATC 3 cut(s) 390, 403, 831
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 571
BsrI ACTGG 2 cut(s) 453, 765
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 4 cut(s) 103, 395, 454, 823
BssT1I CCWWGG 1 cut(s) 609
Bst4CI ACNGT 3 cut(s) 154, 478, 653
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 949, 1077
BstDEI CTNAG 6 cut(s) 49, 519, 615, 819, 844, 998
BstF5I GGATG 4 cut(s) 163, 625, 728, 1051
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 4 cut(s) 106, 398, 457, 826
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 103, 395, 454, 823
BstMWI GCNNNNNNNGC 2 cut(s) 11, 270
BstSFI CTRYAG 3 cut(s) 123, 368, 649
BstV1I GCAGC 4 cut(s) 23, 137, 721, 1091
BstV2I GAAGAC 1 cut(s) 915
BstX2I RGATCY 2 cut(s) 395, 823
BstYI RGATCY 2 cut(s) 395, 823
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 4 cut(s) 163, 625, 728, 1051
BtsIMutI CAGTG 2 cut(s) 446, 772
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 949, 1077
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 746
Csp6I GTAC 4 cut(s) 77, 301, 625, 865
CviAII CATG 1 cut(s) 862
CviQI GTAC 4 cut(s) 77, 301, 625, 865
DdeI CTNAG 6 cut(s) 49, 519, 615, 819, 844, 998
DpnI GATC 4 cut(s) 105, 397, 456, 825
DpnII GATC 4 cut(s) 103, 395, 454, 823
Ecl136II GAGCTC 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 845
Eco47I GGWCC 1 cut(s) 746
Eco47III AGCGCT 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 843
Eco57I CTGAAG 1 cut(s) 683
Eco72I CACGTG 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 843
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 1 cut(s) 865
FaqI GGGAC 1 cut(s) 987
FatI CATG 1 cut(s) 861
FauI CCCGC 1 cut(s) 1017
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 12, 126, 735, 1080
FokI GGATG 4 cut(s) 170, 632, 735, 1038
FriOI GRGCYC 1 cut(s) 845
Fsp4HI GCNGC 4 cut(s) 12, 126, 735, 1080
FspBI CTAG 2 cut(s) 687, 1076
GlaI GCGC 1 cut(s) 274
GluI GCNGC 4 cut(s) 12, 126, 735, 1080
GsuI CTGGAG 1 cut(s) 748
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 865
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 4 cut(s) 146, 761, 858, 1018
HpaII CCGG 1 cut(s) 399
Hpy188I TCNGA 6 cut(s) 243, 336, 663, 847, 1017, 1072
Hpy188III TCNNGA 5 cut(s) 178, 195, 390, 697, 960
Hpy99I CGWCG 2 cut(s) 247, 478
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 3 cut(s) 154, 478, 653
HpyCH4IV ACGT 2 cut(s) 739, 1113
HpyCH4V TGCA 6 cut(s) 98, 125, 370, 386, 737, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 270
HpyF3I CTNAG 6 cut(s) 49, 519, 615, 819, 844, 998
HpySE526I ACGT 2 cut(s) 739, 1113
Hsp92II CATG 1 cut(s) 865
HspAI GCGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 395, 454, 823
LmnI GCTCC 2 cut(s) 118, 683
Lsp1109I GCAGC 4 cut(s) 23, 137, 721, 1091
LweI GCATC 2 cut(s) 395, 713
MaeI CTAG 2 cut(s) 687, 1076
MaeII ACGT 2 cut(s) 739, 1113
MaeIII GTNAC 3 cut(s) 88, 653, 1114
MalI GATC 4 cut(s) 105, 397, 456, 825
MboI GATC 4 cut(s) 103, 395, 454, 823
MboII GAAGA 2 cut(s) 920, 982
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 2 cut(s) 395, 823
MhlI GDGCHC 1 cut(s) 845
MluCI AATT 8 cut(s) 282, 379, 467, 501, 586, 692, 717, 836
MlyI GAGTC 3 cut(s) 140, 755, 852
MmeI TCCRAC 2 cut(s) 266, 724
MnlI CCTC 8 cut(s) 243, 386, 723, 772, 814, 839, 1021, 1094
MseI TTAA 5 cut(s) 267, 378, 639, 800, 968
MspI CCGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 717
MwoI GCNNNNNNNGC 2 cut(s) 11, 270
NdeII GATC 4 cut(s) 103, 395, 454, 823
NheI GCTAGC 1 cut(s) 1075
NlaIII CATG 1 cut(s) 865
NlaIV GGNNCC 3 cut(s) 114, 166, 397
NmuCI GTSAC 1 cut(s) 1114
PfeI GAWTC 1 cut(s) 1018
PkrI GCNGC 4 cut(s) 13, 127, 736, 1081
PleI GAGTC 3 cut(s) 140, 755, 852
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
PpsI GAGTC 3 cut(s) 140, 755, 852
Ppu21I YACGTR 1 cut(s) 740
PsiI TTATAA 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 845
PspCI CACGTG 1 cut(s) 740
PspN4I GGNNCC 3 cut(s) 114, 166, 397
PspPI GGNCC 1 cut(s) 746
PstI CTGCAG 2 cut(s) 127, 372
PsuI RGATCY 2 cut(s) 395, 823
RsaI GTAC 4 cut(s) 78, 302, 626, 866
RsaNI GTAC 4 cut(s) 77, 301, 625, 865
SacI GAGCTC 1 cut(s) 845
SaqAI TTAA 5 cut(s) 267, 378, 639, 800, 968
SatI GCNGC 4 cut(s) 12, 126, 735, 1080
Sau3AI GATC 4 cut(s) 103, 395, 454, 823
Sau96I GGNCC 1 cut(s) 746
ScaI AGTACT 1 cut(s) 626
SchI GAGTC 3 cut(s) 140, 755, 852
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 2 cut(s) 395, 713
SfcI CTRYAG 3 cut(s) 123, 368, 649
SinI GGWCC 1 cut(s) 746
Sse9I AATT 8 cut(s) 282, 379, 467, 501, 586, 692, 717, 836
SsiI CCGC 2 cut(s) 314, 1024
SspMI CTAG 2 cut(s) 687, 1076
SstI GAGCTC 1 cut(s) 845
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 3 cut(s) 154, 478, 653
TaiI ACGT 2 cut(s) 742, 1116
TaqI TCGA 4 cut(s) 149, 194, 576, 755
TasI AATT 8 cut(s) 282, 379, 467, 501, 586, 692, 717, 836
TatI WGTACW 2 cut(s) 624, 864
TfiI GAWTC 1 cut(s) 1018
Tru1I TTAA 5 cut(s) 267, 378, 639, 800, 968
Tru9I TTAA 5 cut(s) 267, 378, 639, 800, 968
TscAI CASTG 2 cut(s) 453, 772
TseFI GTSAC 1 cut(s) 1114
TseI GCWGC 4 cut(s) 11, 125, 734, 1079
Tsp45I GTSAC 1 cut(s) 1114
TspDTI ATGAA 3 cut(s) 50, 124, 900
TspGWI ACGGA 1 cut(s) 1073
TspRI CASTG 2 cut(s) 453, 772
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 1 cut(s) 692
XspI CTAG 2 cut(s) 687, 1076
ZrmI AGTACT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.