Rh6DG232100

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000448
Physical Location & Seq
Reverse (-)
41379719 .. 41392112
12394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG232100.1

Sequence Viewer

Length: 522 bp
ATGGTTAGTTGGCTCGAAACTGATGGAATGAAACAAAGTAGCAAGGCAAGGGCAGACTTCCCCCACAATGGCATTGACTTTCCTAACTCACCAAGACCCACTGGAAGGTTCAGCAATGGCCTCAACAGTGCTGATTTTCTAGGGTCTGGTGTTCTTGACATAACTGGACAAACATTGCTGACCAGGAATGTTATTGGTGCCTCATTCAACAACCAAAAAAATGTTATCCCATTAACAGAACAGATACGGCAATTGTCATCCGTCAAGAACAATCTCATGGCCAAAATGGGTGCAGCAGCAACTGAGAAGTTTCTTTCGAAGTCTTTGATCTTCACCAGCAGTGGAAGCAATGACCTTTTCGGATATTATCATTCAAACAGTTCAATTCCCAAAGAAGAATTCTTGTCATCTTTAGGACTTGCTTATGAGAACCACTTGAAGCTGACATATTTATGTTATAGCACACTGTCTAGTGTCACAGATAAACAAGTTTTGAAGGAGCAATTACTGTTCTTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

173

Amino Acids

19.06

Weight (kDa)

8.67

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 398
AfiI CCNNNNNNNGG 2 cut(s) 68, 105
AgsI TTSAA 5 cut(s) 208, 375, 384, 439, 496
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 2 cut(s) 118, 279
ApeKI GCWGC 2 cut(s) 293, 296
ApoI RAATTY 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 81, 325
AsuII TTCGAA 1 cut(s) 317
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 305, 308
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 184
BfaI CTAG 2 cut(s) 140, 471
BisI GCNGC 2 cut(s) 294, 297
BlsI GCNGC 2 cut(s) 295, 298
Bme1390I CCNGG 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 105
Bse1I ACTGG 2 cut(s) 106, 169
Bse3DI GCAATG 3 cut(s) 121, 173, 355
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 68, 105
BseMI GCAATG 3 cut(s) 121, 173, 355
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 106, 169
BseXI GCAGC 2 cut(s) 305, 308
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 2 cut(s) 120, 281
BshNI GGYRCC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 68, 105
BsnI GGCC 2 cut(s) 120, 281
Bsp119I TTCGAA 1 cut(s) 317
Bsp143I GATC 1 cut(s) 327
BspANI GGCC 2 cut(s) 120, 281
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 3 cut(s) 121, 173, 355
BsrI ACTGG 2 cut(s) 106, 169
BssMI GATC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 4 cut(s) 128, 380, 468, 510
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 305, 308
BsuRI GGCC 2 cut(s) 120, 281
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 4 cut(s) 99, 133, 346, 464
CaiI CAGNNNCTG 1 cut(s) 302
CviAII CATG 1 cut(s) 277
CviJI RGCY 4 cut(s) 13, 120, 281, 442
CviKI_1 RGCY 4 cut(s) 13, 120, 281, 442
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 182
FaeI CATG 1 cut(s) 280
FaiI YATR 6 cut(s) 161, 278, 426, 448, 454, 459
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 294, 297
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 294, 297
FspBI CTAG 2 cut(s) 140, 471
GluI GCNGC 2 cut(s) 294, 297
HaeIII GGCC 2 cut(s) 120, 281
Hin1II CATG 1 cut(s) 280
HphI GGTGA 2 cut(s) 81, 325
Hpy188I TCNGA 1 cut(s) 362
Hpy188III TCNNGA 2 cut(s) 155, 265
HpyAV CCTTC 2 cut(s) 99, 490
HpyCH4III ACNGT 4 cut(s) 128, 380, 468, 510
HpyCH4V TGCA 2 cut(s) 293, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 499
LpnPI CCDG 6 cut(s) 87, 132, 150, 169, 196, 349
Lsp1109I GCAGC 2 cut(s) 305, 308
MaeI CTAG 2 cut(s) 140, 471
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 2 cut(s) 322, 407
MfeI CAATTG 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 4 cut(s) 251, 384, 398, 503
MluNI TGGCCA 1 cut(s) 281
MnlI CCTC 2 cut(s) 131, 211
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 2 cut(s) 233, 520
MslI CAYNNNNRTG 1 cut(s) 451
Msp20I TGGCCA 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 184
MunI CAATTG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 345
NdeII GATC 1 cut(s) 327
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 475
NspV TTCGAA 1 cut(s) 317
PkrI GCNGC 2 cut(s) 295, 298
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 2 cut(s) 233, 520
SatI GCNGC 2 cut(s) 294, 297
Sau3AI GATC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 184
SetI ASST 3 cut(s) 110, 357, 444
SfuI TTCGAA 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 451
Sse9I AATT 4 cut(s) 251, 384, 398, 503
SspMI CTAG 2 cut(s) 140, 471
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 4 cut(s) 128, 380, 468, 510
TaqI TCGA 2 cut(s) 15, 317
TasI AATT 4 cut(s) 251, 384, 398, 503
Tru1I TTAA 2 cut(s) 233, 520
Tru9I TTAA 2 cut(s) 233, 520
TscAI CASTG 4 cut(s) 106, 133, 346, 471
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 293, 296
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 4 cut(s) 106, 133, 346, 471
XapI RAATTY 1 cut(s) 398
XspI CTAG 2 cut(s) 140, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.