Rmu_sc0013919.1_g000009

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013919.1
OG0000448
Physical Location & Seq
Reverse (-)
35685 .. 37813
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013919.1_g000009.1.cds

Sequence Viewer

Length: 693 bp
atggccaagtctgcaatgttttctctttggctcaatattattgtgtatctcggcatacttggattgcaagtctcacactctcagccatctgtgccagcactatacatatttggtgactccacagctgatgttggaaccaacaattatctgcccggttctagggcgagggccaatttcccttataacgggattgattttcctcaatctagaccaactgggagatttagcaacggtttcaacactattgattatctaggtattcaatcctttgctgctgattgtgcagtcgctaatatctccaagtctctcttcatcatcagcgtcggaagcaatgacatattcgaacattttgattataactacactagtaaccctattgttatcgggcaaaactacatcgccactctcatctccacctacgaaactcatctaaggaatttatatgagctaggagccagaagatttgggattattagtgttggggcaattgggtgctgtccgtgtcaacgtaattcgagtagatctggtgattgtttcgaggccatgaatgtggatgctcagttgttctacactgcactccgacgtctcttgcaaaagttgagttcagagtgtgaggggttgatgtatgcacttggagattcatataaaatgacaaaatctattatcgacaaccccgatcagtctggtaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

230

Amino Acids

25.31

Weight (kDa)

5.88

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 183, 357
AatII GACGTC 1 cut(s) 586
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 436
AcyI GRCGYC 1 cut(s) 583
AfiI CCNNNNNNNGG 2 cut(s) 159, 185
AgsI TTSAA 2 cut(s) 238, 263
AhlI ACTAGT 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 2 cut(s) 125, 448
AluI AGCT 2 cut(s) 125, 448
Alw26I GTCTC 3 cut(s) 76, 309, 590
AoxI GGCC 3 cut(s) 3, 168, 540
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 125, 539
AsuII TTCGAA 1 cut(s) 342
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 76, 309, 590
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 5 cut(s) 159, 207, 254, 366, 449
BglII AGATCT 1 cut(s) 521
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 136, 454
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 583
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 185
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 21, 337
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 159, 185
BseMI GCAATG 2 cut(s) 21, 337
BseMII CTCAG 2 cut(s) 95, 572
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 2 cut(s) 303, 558
BshFI GGCC 3 cut(s) 5, 170, 542
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 159, 185
BsmAI GTCTC 3 cut(s) 76, 309, 590
BsmBI CGTCTC 1 cut(s) 590
BsnI GGCC 3 cut(s) 5, 170, 542
Bsp119I TTCGAA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 521, 676
BspANI GGCC 3 cut(s) 5, 170, 542
BspCNI CTCAG 2 cut(s) 94, 571
BspLI GGNNCC 2 cut(s) 136, 454
BspT104I TTCGAA 1 cut(s) 342
BsrDI GCAATG 2 cut(s) 21, 337
BsrI ACTGG 1 cut(s) 220
BssMI GATC 2 cut(s) 521, 676
BssNI GRCGYC 1 cut(s) 583
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 3 cut(s) 81, 431, 558
BstF5I GGATG 1 cut(s) 559
BstKTI GATC 2 cut(s) 524, 679
BstMAI GTCTC 3 cut(s) 76, 309, 590
BstMBI GATC 2 cut(s) 521, 676
BstMWI GCNNNNNNNGC 4 cut(s) 11, 91, 281, 327
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 1 cut(s) 521
BsuRI GGCC 3 cut(s) 5, 170, 542
BtgZI GCGATG 1 cut(s) 382
BtsCI GGATG 1 cut(s) 559
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 168
CseI GACGC 1 cut(s) 310
CviAII CATG 1 cut(s) 544
CviJI RGCY 8 cut(s) 5, 31, 85, 125, 170, 448, 455, 542
CviKI_1 RGCY 8 cut(s) 5, 31, 85, 125, 170, 448, 455, 542
DdeI CTNAG 3 cut(s) 81, 431, 558
DpnI GATC 2 cut(s) 523, 678
DpnII GATC 2 cut(s) 521, 676
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 1 cut(s) 547
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 1 cut(s) 543
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 5 cut(s) 159, 207, 254, 366, 449
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 3 cut(s) 5, 170, 542
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 310
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 1 cut(s) 547
HincII GTYRAC 1 cut(s) 506
HindII GTYRAC 1 cut(s) 506
HinfI GANTC 2 cut(s) 116, 638
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 125, 539
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 3 cut(s) 326, 581, 607
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 506
Hpy99I CGWCG 2 cut(s) 326, 585
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 2 cut(s) 508, 583
HpyCH4V TGCA 6 cut(s) 14, 67, 284, 575, 592, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 91, 281, 327
HpyF3I CTNAG 3 cut(s) 81, 431, 558
HpySE526I ACGT 2 cut(s) 508, 583
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 1 cut(s) 547
Kzo9I GATC 2 cut(s) 521, 676
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 6 cut(s) 108, 166, 201, 469, 510, 669
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 544
MaeI CTAG 5 cut(s) 159, 207, 254, 366, 449
MaeII ACGT 2 cut(s) 508, 583
MaeIII GTNAC 2 cut(s) 113, 368
MalI GATC 2 cut(s) 523, 678
MboI GATC 2 cut(s) 521, 676
MboII GAAGA 2 cut(s) 301, 471
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 521
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 142, 172, 436, 486, 511, 688
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 3 cut(s) 112, 304, 604
MnlI CCTC 4 cut(s) 159, 210, 532, 607
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 691
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 486
MwoI GCNNNNNNNGC 4 cut(s) 11, 91, 281, 327
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 521, 676
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 2 cut(s) 136, 454
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 113
NspV TTCGAA 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PfeI GAWTC 1 cut(s) 638
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 2 cut(s) 183, 357
PspN4I GGNNCC 2 cut(s) 136, 454
PspPI GGNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 691
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 521, 676
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 153
SetI ASST 6 cut(s) 127, 259, 419, 450, 511, 586
SfaNI GCATC 1 cut(s) 544
SfuI TTCGAA 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 6 cut(s) 142, 172, 436, 486, 511, 688
SspI AATATT 1 cut(s) 37
SspMI CTAG 5 cut(s) 159, 207, 254, 366, 449
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 2 cut(s) 511, 586
TaqI TCGA 4 cut(s) 342, 515, 537, 666
TasI AATT 6 cut(s) 142, 172, 436, 486, 511, 688
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 691
Tru9I TTAA 1 cut(s) 691
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 301, 560, 630
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 1 cut(s) 577
XapI RAATTY 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 206
XspI CTAG 5 cut(s) 159, 207, 254, 366, 449
ZraI GACGTC 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.