FvH4_1g10800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000448
Physical Location & Seq
Forward (+)
5902409 .. 5904217
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10800.t1

Sequence Viewer

Length: 1053 bp
ATGGCAAAGCCCGCTGATCTGTTGCTCTGCGTTTCATCATTTTCTTTCTTAGTTCTCTTTCAAACTTTCCTGTTCGTATTCGTATTCGTACCAGTTGCCAACACAGATGATCAGGTGGCTCCTAAACCTGCAGCTATTTTCATATTTGGAGATTCGACTGTGGATGTTGGCACCAACAAATTGTTGCGCAATAGTCTTTCCAGAGCTGATTTCTCACCCAACGGGGTTGATTTTCCTTATGCTATTCCGACGGGGAGGTTTAGTAACGGTCTTAACAGCGCCGACCAAATTGGTACGACCTTGTTGCATGTGCAAGTTGTGCCAATGGGAAAACAGGTCAAACAATTTGAGACTGTTCGTGGGAATATCACAGAACTAATTGGTTTTGGGGGAACTGAGTTTATGCTTTCCAACTCTTTGTTCGTTATTAGCATTGGAAGCAACGACCTGTTCGAATTAGTGAATTGGTATCCAAATATCACTGTCTTGGAAAAGGCTGAGTACTTGGTAAATCTTAAACTTGAGTACCGTAATCATCTGAAGGACTTGTACAATCTCGGAGCTAGAAAGTTCGGGATCATAAGTGTTCCTCCAATTGGATGCTGTCCTGCTGCTCGTGTTGGACCAAAATCAAATGACTCCAGTGTCTGTGTAGAAGAACTAAACAACCTTGCCTTAACATTTCTTGCACAGACTGAGGATTTCCTCCGAACATTAAGCTCAGAGTTGAAAGGATTCAAGTACTCGCTTGGAAACGCTTATGAAATGACTATGAGTATCCTTGAAGACCCATTAGCATTTGGCTTCAAGGACACTCGATCAGCCTGCTGTGGGTTAGGAGAGTTAAATGGAAAGTTACCTTGCCTCTTCTTCCTCGATCCCAAACTGTGTCCGAATCGGCGCGAGGTTTTGTTCTGGGATTTGTATCATCCTACTGACTTTGCTTCCGAGCTAGCAGCGCTAACCCTTTATGGCGGAGGAACAAGATTCGTCACACCTATGAACTTCAGTCAGTTGGTGGCTTTAAACATTAGCTCTTACACACAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

351

Amino Acids

38.63

Weight (kDa)

5.21

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 46 - 320 3.2e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 644
Acc16I TGCGCA 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 170
AccII CGCG 1 cut(s) 903
AciI CCGC 2 cut(s) 12, 975
AclWI GGATC 2 cut(s) 584, 872
AcuI CTGAAG 2 cut(s) 560, 991
AfaI GTAC 6 cut(s) 90, 295, 503, 527, 551, 743
AfeI AGCGCT 1 cut(s) 960
AfiI CCNNNNNNNGG 2 cut(s) 596, 831
AgsI TTSAA 5 cut(s) 62, 730, 739, 785, 808
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 6 cut(s) 134, 206, 563, 720, 952, 1035
AluI AGCT 6 cut(s) 134, 206, 563, 720, 952, 1035
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 2 cut(s) 584, 872
AlwNI CAGNNNCTG 1 cut(s) 648
Aor51HI AGCGCT 1 cut(s) 960
ApeKI GCWGC 3 cut(s) 131, 611, 956
Asp700I GAANNNNTTC 1 cut(s) 734
AspLEI GCGC 4 cut(s) 189, 281, 903, 961
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 1 cut(s) 207
AsuII TTCGAA 1 cut(s) 453
AsuNHI GCTAGC 1 cut(s) 952
AvaII GGWCC 1 cut(s) 623
BaeI ACNNNNGTAYC 2 cut(s) 509, 542
BanI GGYRCC 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 533, 565
BauI CACGAG 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 792
BbvI GCAGC 3 cut(s) 143, 598, 968
BcgI CGANNNNNNTGC 4 cut(s) 286, 320, 807, 841
BciVI GTATCC 2 cut(s) 480, 788
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 564, 953
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 2 cut(s) 282, 962
BfuAI ACCTGC 1 cut(s) 136
BfuI GTATCC 2 cut(s) 480, 788
BisI GCNGC 3 cut(s) 132, 612, 957
BlsI GCNGC 3 cut(s) 133, 613, 958
BmcAI AGTACT 2 cut(s) 503, 743
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 2 cut(s) 120, 172
BmsI GCATC 1 cut(s) 590
BmtI GCTAGC 1 cut(s) 956
BpiI GAAGAC 1 cut(s) 792
BpmI CTGGAG 1 cut(s) 625
Bpu14I TTCGAA 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 924
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 831
Bse1I ACTGG 2 cut(s) 92, 642
Bse8I GATNNNNATC 1 cut(s) 924
BseGI GGATG 3 cut(s) 169, 605, 928
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 2 cut(s) 596, 831
BseMII CTCAG 4 cut(s) 387, 489, 687, 735
BseNI ACTGG 2 cut(s) 92, 642
BseXI GCAGC 3 cut(s) 143, 598, 968
Bsh1236I CGCG 1 cut(s) 903
BshNI GGYRCC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 596, 831
BsmAI GTCTC 1 cut(s) 344
Bsp119I TTCGAA 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 5 cut(s) 16, 109, 576, 818, 877
BspACI CCGC 2 cut(s) 12, 975
BspCNI CTCAG 4 cut(s) 388, 490, 688, 734
BspFNI CGCG 1 cut(s) 903
BspLI GGNNCC 2 cut(s) 120, 172
BspMAI CTGCAG 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 584, 872
BspT104I TTCGAA 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 2 cut(s) 92, 642
BssMI GATC 5 cut(s) 16, 109, 576, 818, 877
BssSI CACGAG 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 615
Bst4CI ACNGT 6 cut(s) 160, 269, 355, 484, 530, 888
Bst6I CTCTTC 1 cut(s) 872
BstAPI GCANNNNNTGC 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 3 cut(s) 12, 826, 954
BstDEI CTNAG 5 cut(s) 49, 396, 498, 696, 721
BstF5I GGATG 3 cut(s) 169, 605, 928
BstFNI CGCG 1 cut(s) 903
BstH2I RGCGCY 2 cut(s) 282, 962
BstHHI GCGC 4 cut(s) 189, 281, 903, 961
BstKTI GATC 5 cut(s) 19, 112, 579, 821, 880
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 5 cut(s) 16, 109, 576, 818, 877
BstMWI GCNNNNNNNGC 4 cut(s) 11, 319, 438, 958
BstNSI RCATGY 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 3 cut(s) 143, 598, 968
BstV2I GAAGAC 1 cut(s) 792
BsuI GTATCC 2 cut(s) 480, 788
BtsCI GGATG 3 cut(s) 169, 605, 928
BtsIMutI CAGTG 2 cut(s) 480, 649
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 12, 826, 954
CaiI CAGNNNCTG 1 cut(s) 648
CfoI GCGC 4 cut(s) 189, 281, 903, 961
Cfr13I GGNCC 1 cut(s) 623
Csp6I GTAC 6 cut(s) 89, 294, 502, 526, 550, 742
CviAII CATG 1 cut(s) 308
CviQI GTAC 6 cut(s) 89, 294, 502, 526, 550, 742
DdeI CTNAG 5 cut(s) 49, 396, 498, 696, 721
DpnI GATC 5 cut(s) 18, 111, 578, 820, 879
DpnII GATC 5 cut(s) 16, 109, 576, 818, 877
DraI TTTAAA 1 cut(s) 1026
DrdI GACNNNNNNGTC 1 cut(s) 644
DseDI GACNNNNNNGTC 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 872
EarI CTCTTC 1 cut(s) 872
EciI GGCGGA 1 cut(s) 990
Eco47I GGWCC 1 cut(s) 623
Eco47III AGCGCT 1 cut(s) 960
Eco57I CTGAAG 2 cut(s) 560, 991
FaeI CATG 1 cut(s) 311
FaiI YATR 9 cut(s) 143, 240, 309, 404, 581, 762, 773, 972, 1001
FatI CATG 1 cut(s) 307
FauI CCCGC 1 cut(s) 19
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 132, 612, 957
FokI GGATG 3 cut(s) 176, 612, 915
Fsp4HI GCNGC 3 cut(s) 132, 612, 957
FspBI CTAG 2 cut(s) 564, 953
FspI TGCGCA 1 cut(s) 188
GlaI GCGC 4 cut(s) 188, 280, 902, 960
GluI GCNGC 3 cut(s) 132, 612, 957
GsuI CTGGAG 1 cut(s) 625
HaeII RGCGCY 2 cut(s) 282, 962
HhaI GCGC 4 cut(s) 189, 281, 903, 961
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 4 cut(s) 187, 279, 901, 959
HinP1I GCGC 4 cut(s) 187, 279, 901, 959
HinfI GANTC 5 cut(s) 152, 638, 735, 895, 987
HphI GGTGA 1 cut(s) 207
Hpy188I TCNGA 7 cut(s) 249, 540, 560, 710, 724, 894, 949
Hpy188III TCNNGA 2 cut(s) 201, 574
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 535
HpyCH4III ACNGT 6 cut(s) 160, 269, 355, 484, 530, 888
HpyCH4V TGCA 4 cut(s) 131, 307, 313, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 319, 438, 958
HpyF3I CTNAG 5 cut(s) 49, 396, 498, 696, 721
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 4 cut(s) 187, 279, 901, 959
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 5 cut(s) 16, 109, 576, 818, 877
LmnI GCTCC 2 cut(s) 124, 560
Lsp1109I GCAGC 3 cut(s) 143, 598, 968
LweI GCATC 1 cut(s) 590
MaeI CTAG 2 cut(s) 564, 953
MaeIII GTNAC 3 cut(s) 263, 855, 991
MalI GATC 5 cut(s) 18, 111, 578, 820, 879
MboI GATC 5 cut(s) 16, 109, 576, 818, 877
MboII GAAGA 4 cut(s) 668, 797, 859, 862
MfeI CAATTG 1 cut(s) 594
MluCI AATT 7 cut(s) 179, 288, 344, 378, 455, 463, 594
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 3 cut(s) 272, 435, 601
MnlI CCTC 8 cut(s) 249, 600, 691, 716, 875, 884, 898, 971
MroXI GAANNNNTTC 1 cut(s) 734
MseI TTAA 6 cut(s) 273, 516, 677, 716, 845, 1025
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 1 cut(s) 14
MunI CAATTG 1 cut(s) 594
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 4 cut(s) 11, 319, 438, 958
NdeII GATC 5 cut(s) 16, 109, 576, 818, 877
NheI GCTAGC 1 cut(s) 952
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 2 cut(s) 120, 172
NmuCI GTSAC 1 cut(s) 991
NsbI TGCGCA 1 cut(s) 188
NspI RCATGY 1 cut(s) 311
NspV TTCGAA 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 4 cut(s) 152, 735, 895, 987
PkrI GCNGC 3 cut(s) 133, 613, 958
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
PspN4I GGNNCC 2 cut(s) 120, 172
PspPI GGNCC 1 cut(s) 623
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 648
RsaI GTAC 6 cut(s) 90, 295, 503, 527, 551, 743
RsaNI GTAC 6 cut(s) 89, 294, 502, 526, 550, 742
RseI CAYNNNNRTG 1 cut(s) 998
SaqAI TTAA 6 cut(s) 273, 516, 677, 716, 845, 1025
SatI GCNGC 3 cut(s) 132, 612, 957
Sau3AI GATC 5 cut(s) 16, 109, 576, 818, 877
Sau96I GGNCC 1 cut(s) 623
ScaI AGTACT 2 cut(s) 503, 743
SchI GAGTC 1 cut(s) 632
SfaNI GCATC 1 cut(s) 590
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 7 cut(s) 179, 288, 344, 378, 455, 463, 594
SsiI CCGC 2 cut(s) 12, 975
SspMI CTAG 2 cut(s) 564, 953
TaaI ACNGT 6 cut(s) 160, 269, 355, 484, 530, 888
TaqI TCGA 4 cut(s) 155, 453, 817, 876
TasI AATT 7 cut(s) 179, 288, 344, 378, 455, 463, 594
TatI WGTACW 3 cut(s) 501, 549, 741
TfiI GAWTC 4 cut(s) 152, 735, 895, 987
Tru1I TTAA 6 cut(s) 273, 516, 677, 716, 845, 1025
Tru9I TTAA 6 cut(s) 273, 516, 677, 716, 845, 1025
TscAI CASTG 2 cut(s) 487, 649
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 3 cut(s) 131, 611, 956
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 4 cut(s) 24, 130, 777, 1016
TspRI CASTG 2 cut(s) 487, 649
VpaK11BI GGWCC 1 cut(s) 623
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 2 cut(s) 564, 953
ZrmI AGTACT 2 cut(s) 503, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.