RLG00000016751

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000448
Physical Location & Seq
Forward (+)
9697960 .. 9701314
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016751

Sequence Viewer

Length: 1119 bp
ATGGTCAAGTCTGCAATGTTTTCTCTTTGGCTCAATATTATTGTGTACCTCGGCATACTTGGATTGCAAGTCTCACACTCTCAGCCATCTGTGCCAGCACTTTACATATTTGGTGACTCCACAGCTGATGTTGGAACCAACAATTATTTGCCCGGTTCTAGGGCGAGGGCCGATTTCCCTTATAACGGGATTGATTTTCCTCAATCTAGACCAACTGGGAGATTTAGCAACGGTTTCAACACTATTGATTATCTAGCCCAGTATCTGAAATTCTATGAAAGCCCGCCGCCTTTTCTCTCTTTTTCGGACAGCAATATTTCACAATTTCTCATCAAGACTGTTCCAACGAAGGGAATCAATTTTGCTTCAGGAGGGTCAGGACTTCTGCATTCTACAGGACAAAAGAAGTATAGAAGGGTGATTTCTTTTGGAGAACAAGTCCAACAATTTGCAAGTGTTCGCAACCATATTTCAAAATTATTGGGTGCGAGTGCAGTCGCTAATATCTCCAAGTCTCTCTTCATCATCAGCGTCGGAAGCAATGACATATTTGAACATTTTGATTATAACTACACTAGTAACCCTATTGTTATTGGGCAAAACTACATCGCCACTCTCATCTCCACCTACGAAACTCATCTAAGGAATTTGTATGAGCTAGGAGCCAGAAGATTTGGGATTATTAGTGTTGGGGCAATTGGGTGCTGTCCGTGTCAACGTAATTCAAGTAGATCTGGTGACTGTTTCGAGGCCATGAATGTGGATGCTCAGTTGTTCTACACTACACTCCGACGTCTCTTGCAAAAGTTGAGTTCAGATTGTGAGGGGTTGATGTATGCACTTGGAGATTCATATAAAATGACAAAATCTATTATCGACGACCCCGATCAGTCTGGTTTTACCGAGATGAAAAAAGCTTGCTGTGGAAAAGGAAACTTGAAAGCAAAGCACGCATGTAAACAGGATTCGGATCTGTGTGAAAATCGCACAACCCACTTGTTTTGGGACCGGTACCATCCAACACAGACCGCTTCTAAACTCGCAGCCTCTGGTCTTTATATTGGTGACAAATCATATGTGGTGCCCATGAGTTTTGCTGAATTGGCCCTTCGGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

373

Amino Acids

41.2

Weight (kDa)

8.83

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 350 1.1e-28 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 183, 567
AatII GACGTC 1 cut(s) 796
Acc65I GGTACC 1 cut(s) 1011
AccB1I GGYRCC 2 cut(s) 1011, 1081
AciI CCGC 3 cut(s) 284, 287, 1029
AclWI GGATC 1 cut(s) 978
AcoI YGGCCR 1 cut(s) 1112
AcsI RAATTY 2 cut(s) 269, 646
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 793
AfaI GTAC 2 cut(s) 47, 1013
AfiI CCNNNNNNNGG 3 cut(s) 159, 185, 350
AgeI ACCGGT 1 cut(s) 1008
AgsI TTSAA 5 cut(s) 238, 474, 554, 726, 940
AhlI ACTAGT 1 cut(s) 575
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 3 cut(s) 125, 658, 917
AluI AGCT 3 cut(s) 125, 658, 917
Alw26I GTCTC 3 cut(s) 76, 519, 800
AlwI GGATC 1 cut(s) 978
AlwNI CAGNNNCTG 2 cut(s) 265, 1049
AoxI GGCC 4 cut(s) 168, 750, 1104, 1112
ApeKI GCWGC 1 cut(s) 1043
ApoI RAATTY 2 cut(s) 269, 646
AsiGI ACCGGT 1 cut(s) 1008
Asp718I GGTACC 1 cut(s) 1011
AspS9I GGNCC 3 cut(s) 168, 1006, 1105
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 4 cut(s) 125, 430, 749, 1076
AvaII GGWCC 1 cut(s) 1006
BaeGI GKGCMC 1 cut(s) 1086
BanI GGYRCC 2 cut(s) 1011, 1081
BbvI GCAGC 1 cut(s) 1055
BccI CCATC 2 cut(s) 94, 1023
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 76, 519, 800
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 5 cut(s) 159, 207, 254, 576, 659
BfmI CTRYAG 1 cut(s) 393
BglII AGATCT 1 cut(s) 731
BisI GCNGC 2 cut(s) 287, 1044
BlsI GCNGC 2 cut(s) 288, 1045
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 1006
BmgT120I GGNCC 3 cut(s) 168, 1006, 1105
BmiI GGNNCC 5 cut(s) 136, 664, 1007, 1013, 1083
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 2 cut(s) 225, 253
BmsI GCATC 1 cut(s) 754
BmuI ACTGGG 2 cut(s) 225, 253
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 969
BsaHI GRCGYC 1 cut(s) 793
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 1008
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 185, 350
Bse118I RCCGGY 1 cut(s) 1008
Bse1I ACTGG 2 cut(s) 220, 259
Bse3DI GCAATG 2 cut(s) 21, 547
Bse8I GATNNNNATC 1 cut(s) 969
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 2 cut(s) 769, 1015
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 3 cut(s) 159, 185, 350
BseMI GCAATG 2 cut(s) 21, 547
BseMII CTCAG 2 cut(s) 95, 782
BseNI ACTGG 2 cut(s) 220, 259
BseSI GKGCMC 1 cut(s) 1086
BseXI GCAGC 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 513
BshFI GGCC 4 cut(s) 170, 752, 1106, 1114
BshNI GGYRCC 2 cut(s) 1011, 1081
BshTI ACCGGT 1 cut(s) 1008
BsiSI CCGG 2 cut(s) 153, 1009
BslFI GGGAC 1 cut(s) 1019
BslI CCNNNNNNNGG 3 cut(s) 159, 185, 350
BsmAI GTCTC 3 cut(s) 76, 519, 800
BsmBI CGTCTC 1 cut(s) 800
BsmFI GGGAC 1 cut(s) 1019
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 4 cut(s) 170, 752, 1106, 1114
Bsp1286I GDGCHC 1 cut(s) 1086
Bsp143I GATC 3 cut(s) 731, 886, 970
BspACI CCGC 3 cut(s) 284, 287, 1029
BspANI GGCC 4 cut(s) 170, 752, 1106, 1114
BspCNI CTCAG 2 cut(s) 94, 781
BspLI GGNNCC 5 cut(s) 136, 664, 1007, 1013, 1083
BspPI GGATC 1 cut(s) 978
BspT107I GGYRCC 2 cut(s) 1011, 1081
BsrDI GCAATG 2 cut(s) 21, 547
BsrFI RCCGGY 1 cut(s) 1008
BsrI ACTGG 2 cut(s) 220, 259
BssAI RCCGGY 1 cut(s) 1008
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 3 cut(s) 731, 886, 970
BssNI GRCGYC 1 cut(s) 793
Bst4CI ACNGT 3 cut(s) 233, 340, 743
Bst6I CTCTTC 1 cut(s) 524
BstACI GRCGYC 1 cut(s) 793
BstC8I GCNNGC 4 cut(s) 96, 284, 919, 951
BstDEI CTNAG 3 cut(s) 81, 641, 768
BstF5I GGATG 2 cut(s) 769, 1015
BstKTI GATC 3 cut(s) 734, 889, 973
BstMAI GTCTC 3 cut(s) 76, 519, 800
BstMBI GATC 3 cut(s) 731, 886, 970
BstMWI GCNNNNNNNGC 4 cut(s) 91, 537, 950, 1103
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 1086
BstV1I GCAGC 1 cut(s) 1055
BstX2I RGATCY 2 cut(s) 731, 970
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 2 cut(s) 731, 970
BsuRI GGCC 4 cut(s) 170, 752, 1106, 1114
BtgZI GCGATG 1 cut(s) 592
BtsCI GGATG 2 cut(s) 769, 1015
Cac8I GCNNGC 4 cut(s) 96, 284, 919, 951
CaiI CAGNNNCTG 2 cut(s) 265, 1049
Cfr10I RCCGGY 1 cut(s) 1008
Cfr13I GGNCC 3 cut(s) 168, 1006, 1105
CseI GACGC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 46, 1012
CspAI ACCGGT 1 cut(s) 1008
CspCI CAANNNNNGTGG 2 cut(s) 983, 1018
CviAII CATG 3 cut(s) 754, 954, 1087
CviQI GTAC 2 cut(s) 46, 1012
DdeI CTNAG 3 cut(s) 81, 641, 768
DpnI GATC 3 cut(s) 733, 888, 972
DpnII GATC 3 cut(s) 731, 886, 970
EaeI YGGCCR 1 cut(s) 1112
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 1006
Eco57I CTGAAG 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 800
FaeI CATG 3 cut(s) 757, 957, 1090
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 1019
FatI CATG 3 cut(s) 753, 953, 1086
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 1 cut(s) 1075
Fnu4HI GCNGC 2 cut(s) 287, 1044
FokI GGATG 2 cut(s) 776, 1002
Fsp4HI GCNGC 2 cut(s) 287, 1044
FspBI CTAG 5 cut(s) 159, 207, 254, 576, 659
GluI GCNGC 2 cut(s) 287, 1044
HaeIII GGCC 4 cut(s) 170, 752, 1106, 1114
HapII CCGG 2 cut(s) 153, 1009
HgaI GACGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 793
Hin1II CATG 3 cut(s) 757, 957, 1090
HincII GTYRAC 1 cut(s) 716
HindII GTYRAC 1 cut(s) 716
HindIII AAGCTT 1 cut(s) 915
HinfI GANTC 4 cut(s) 116, 354, 848, 965
HpaII CCGG 2 cut(s) 153, 1009
HphI GGTGA 4 cut(s) 125, 430, 749, 1076
Hpy166II GTNNAC 3 cut(s) 46, 716, 959
Hpy188I TCNGA 6 cut(s) 267, 307, 536, 791, 817, 970
Hpy188III TCNNGA 4 cut(s) 207, 334, 369, 378
Hpy8I GTNNAC 3 cut(s) 46, 716, 959
Hpy99I CGWCG 3 cut(s) 536, 795, 881
HpyAV CCTTC 3 cut(s) 343, 408, 1118
HpyCH4III ACNGT 3 cut(s) 233, 340, 743
HpyCH4IV ACGT 2 cut(s) 718, 793
HpyCH4V TGCA 7 cut(s) 14, 67, 388, 452, 494, 802, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 537, 950, 1103
HpyF3I CTNAG 3 cut(s) 81, 641, 768
HpySE526I ACGT 2 cut(s) 718, 793
Hsp92I GRCGYC 1 cut(s) 793
Hsp92II CATG 3 cut(s) 757, 957, 1090
KpnI GGTACC 1 cut(s) 1015
Kzo9I GATC 3 cut(s) 731, 886, 970
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 1 cut(s) 1055
LweI GCATC 1 cut(s) 754
MaeI CTAG 5 cut(s) 159, 207, 254, 576, 659
MaeII ACGT 2 cut(s) 718, 793
MaeIII GTNAC 4 cut(s) 113, 578, 737, 1064
MalI GATC 3 cut(s) 733, 888, 972
MboI GATC 3 cut(s) 731, 886, 970
MboII GAAGA 2 cut(s) 511, 681
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 2 cut(s) 731, 970
MhlI GDGCHC 1 cut(s) 1086
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 6 cut(s) 112, 368, 466, 514, 814, 1043
MnlI CCTC 7 cut(s) 59, 159, 210, 365, 742, 817, 1057
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 153, 1009
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 388
MwoI GCNNNNNNNGC 4 cut(s) 91, 537, 950, 1103
NciI CCSGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 1075
NdeII GATC 3 cut(s) 731, 886, 970
NlaIII CATG 3 cut(s) 757, 957, 1090
NlaIV GGNNCC 5 cut(s) 136, 664, 1007, 1013, 1083
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 3 cut(s) 113, 737, 1064
NspI RCATGY 1 cut(s) 957
PcsI WCGNNNNNNNCGW 1 cut(s) 882
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 354, 848, 965
PinAI ACCGGT 1 cut(s) 1008
PkrI GCNGC 2 cut(s) 288, 1045
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 2 cut(s) 183, 567
PspN4I GGNNCC 5 cut(s) 136, 664, 1007, 1013, 1083
PspPI GGNCC 3 cut(s) 168, 1006, 1105
PstNI CAGNNNCTG 2 cut(s) 265, 1049
PsuI RGATCY 2 cut(s) 731, 970
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 2 cut(s) 47, 1013
RsaNI GTAC 2 cut(s) 46, 1012
RseI CAYNNNNRTG 1 cut(s) 758
SatI GCNGC 2 cut(s) 287, 1044
Sau3AI GATC 3 cut(s) 731, 886, 970
Sau96I GGNCC 3 cut(s) 168, 1006, 1105
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 1086
SetI ASST 7 cut(s) 51, 127, 629, 660, 721, 796, 919
SfaNI GCATC 1 cut(s) 754
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 1006
SmiMI CAYNNNNRTG 1 cut(s) 758
SpeI ACTAGT 1 cut(s) 575
SsiI CCGC 3 cut(s) 284, 287, 1029
SspI AATATT 2 cut(s) 37, 316
SspMI CTAG 5 cut(s) 159, 207, 254, 576, 659
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 233, 340, 743
TaiI ACGT 2 cut(s) 721, 796
TaqI TCGA 2 cut(s) 747, 876
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 3 cut(s) 354, 848, 965
TseFI GTSAC 3 cut(s) 113, 737, 1064
TseI GCWGC 1 cut(s) 1043
Tsp45I GTSAC 3 cut(s) 113, 737, 1064
TspDTI ATGAA 5 cut(s) 291, 511, 770, 840, 923
TspGWI ACGGA 1 cut(s) 699
VpaK11BI GGWCC 1 cut(s) 1006
XapI RAATTY 2 cut(s) 269, 646
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 957
XspI CTAG 5 cut(s) 159, 207, 254, 576, 659
ZraI GACGTC 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.