Rh6BG238600

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000448
Physical Location & Seq
Reverse (-)
44473893 .. 44475496
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG238600.1

Sequence Viewer

Length: 957 bp
ATGGCTGTTCTTAGTTCAGCAGCAGCAGCTAAGCCAGTACTGTTGCCACCAATTTTCATACTAGGTGATTCAACTGCTGATATAGGAACCAATAACTTCTTGCCAGGTAGCAAGGTAAGGGCAGACTTTCCCCACAATGGCATTGACTTTCCTAACTCACCAAGACCCACTGGAAGGTTCAGCAATGGCCTCAACAGTGCTGATTTTCTAGCCCAGCATTTTGGATACAAGAGAAGTCCAAGGCCCTTTCTTTCTCTCAGTGCTACTTCTCTTCAAAAGAAGAAGTTCAGAGGTATTAATTTGCTTCTGGAGGGTCTGGTGAATGTTATTGGTGCCTCATTCAACAACCAAAAAAATGTTATCCCATTAACAGAACAGATACGACAATTGTCATCTGTCAAGAACAATTTCATGGCCAAAATGGGTGCATCAGCAACTGAGAAGTTTCTTTTGAAGTCTTTGATCTTCACCAGCAATGGAAGCAATGACCTTTTCGGATATTATCATTCAAACAGTTCAATTTCCAAAGAAGAATTCTTGTCATCTTTAGTACTTTCTTATGAGAACCACTTGAAGACTTTATACTCTCTTGGAGCAAGGAAGTTTGGAATCATTAGCGTCGCCCCGATTGGCTGCTGCCCATCTCAAAGGATTTTCAATGCTACTGGGGGATGTTTGGAGGAGTTGAATGATCATGCAATAGCCTTCCATTTAAAGCTGGATGCCCTATTGTGCAAGCTCAGCACCGAACACGAAGGCTTTATGTACTCCCTTGGAAATTCATATGAAATGACAATAAACGTCATACAGAACCCTCTTCCATTCAATTTTACACAAGTGGAAGCTGCATGTTGTGGAGCTGGGAAGCTTAGTGGTGAATCCTTCTGTACACCAGATGCTAATCTTTGTTCGAACCGCGACCAATACTTGTTCTGGGATCTATTCCATCCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

318

Amino Acids

34.78

Weight (kDa)

8.37

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 18 - 318 4e-20 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccII CGCG 1 cut(s) 918
AciI CCGC 1 cut(s) 916
AclWI GGATC 1 cut(s) 945
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 2 cut(s) 533, 778
AfaI GTAC 4 cut(s) 39, 552, 767, 889
AfiI CCNNNNNNNGG 2 cut(s) 137, 174
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 6 cut(s) 29, 718, 739, 845, 860, 868
AluI AGCT 6 cut(s) 29, 718, 739, 845, 860, 868
AlwI GGATC 1 cut(s) 945
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 3 cut(s) 187, 242, 414
ApeKI GCWGC 6 cut(s) 20, 23, 26, 633, 636, 845
ApoI RAATTY 2 cut(s) 533, 778
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 2 cut(s) 284, 407
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 5 cut(s) 77, 150, 331, 460, 887
AsuII TTCGAA 1 cut(s) 911
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 566, 598
BbsI GAAGAC 1 cut(s) 581
BbvI GCAGC 6 cut(s) 32, 35, 38, 620, 623, 832
BccI CCATC 2 cut(s) 649, 954
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 218
BclI TGATCA 1 cut(s) 691
BfaI CTAG 2 cut(s) 62, 209
BfuI GTATCC 1 cut(s) 218
BisI GCNGC 6 cut(s) 21, 24, 27, 634, 637, 846
BlpI GCTNAGC 2 cut(s) 30, 740
BlsI GCNGC 6 cut(s) 22, 25, 28, 635, 638, 847
BmcAI AGTACT 2 cut(s) 39, 552
Bme1390I CCNGG 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 88, 334
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 3 cut(s) 437, 712, 886
BmuI ACTGGG 1 cut(s) 675
BoxI GACNNNNGTC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 581
BpmI CTGGAG 1 cut(s) 329
Bpu1102I GCTNAGC 2 cut(s) 30, 740
Bpu14I TTCGAA 1 cut(s) 911
BsaBI GATNNNNATC 1 cut(s) 900
BsaJI CCNNGG 2 cut(s) 239, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 174
Bse1I ACTGG 3 cut(s) 35, 175, 670
Bse3DI GCAATG 3 cut(s) 190, 481, 490
Bse8I GATNNNNATC 1 cut(s) 900
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 239, 772
BseGI GGATG 3 cut(s) 677, 727, 946
BseJI GATNNNNATC 1 cut(s) 900
BseLI CCNNNNNNNGG 2 cut(s) 137, 174
BseMI GCAATG 3 cut(s) 190, 481, 490
BseMII CTCAG 3 cut(s) 271, 429, 754
BseNI ACTGG 3 cut(s) 35, 175, 670
BseRI GAGGAG 1 cut(s) 695
BseXI GCAGC 6 cut(s) 32, 35, 38, 620, 623, 832
BseYI CCCAGC 2 cut(s) 213, 860
Bsh1236I CGCG 1 cut(s) 918
BshFI GGCC 3 cut(s) 189, 244, 416
BshNI GGYRCC 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 137, 174
BsnI GGCC 3 cut(s) 189, 244, 416
Bsp119I TTCGAA 1 cut(s) 911
Bsp1407I TGTACA 1 cut(s) 887
Bsp143I GATC 3 cut(s) 462, 691, 937
Bsp1720I GCTNAGC 2 cut(s) 30, 740
BspACI CCGC 1 cut(s) 916
BspANI GGCC 3 cut(s) 189, 244, 416
BspCNI CTCAG 3 cut(s) 270, 430, 753
BspFNI CGCG 1 cut(s) 918
BspLI GGNNCC 2 cut(s) 88, 334
BspPI GGATC 1 cut(s) 945
BspT104I TTCGAA 1 cut(s) 911
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 3 cut(s) 190, 481, 490
BsrGI TGTACA 1 cut(s) 887
BsrI ACTGG 3 cut(s) 35, 175, 670
BssECI CCNNGG 2 cut(s) 239, 772
BssMI GATC 3 cut(s) 462, 691, 937
BssT1I CCWWGG 2 cut(s) 239, 772
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 3 cut(s) 42, 197, 515
Bst6I CTCTTC 2 cut(s) 276, 822
BstAUI TGTACA 1 cut(s) 887
BstBI TTCGAA 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 6 cut(s) 11, 30, 257, 438, 740, 869
BstF5I GGATG 3 cut(s) 677, 727, 946
BstFNI CGCG 1 cut(s) 918
BstKTI GATC 3 cut(s) 465, 694, 940
BstMBI GATC 3 cut(s) 462, 691, 937
BstMWI GCNNNNNNNGC 3 cut(s) 26, 480, 741
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 852
BstPAI GACNNNNGTC 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 1 cut(s) 918
BstV1I GCAGC 6 cut(s) 32, 35, 38, 620, 623, 832
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 1 cut(s) 937
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 3 cut(s) 189, 244, 416
BtsCI GGATG 3 cut(s) 677, 727, 946
BtsIMutI CAGTG 3 cut(s) 168, 202, 265
Cac8I GCNNGC 1 cut(s) 737
CaiI CAGNNNCTG 1 cut(s) 437
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 607
Csp6I GTAC 4 cut(s) 38, 551, 766, 888
CviAII CATG 3 cut(s) 412, 695, 849
CviQI GTAC 4 cut(s) 38, 551, 766, 888
DdeI CTNAG 6 cut(s) 11, 30, 257, 438, 740, 869
DpnI GATC 3 cut(s) 464, 693, 939
DpnII GATC 3 cut(s) 462, 691, 937
DraI TTTAAA 1 cut(s) 714
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 276, 822
EarI CTCTTC 2 cut(s) 276, 822
Eco130I CCWWGG 2 cut(s) 239, 772
EcoO109I RGGNCCY 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 239, 772
ErhI CCWWGG 2 cut(s) 239, 772
FaeI CATG 3 cut(s) 415, 698, 852
FatI CATG 3 cut(s) 411, 694, 848
FauNDI CATATG 1 cut(s) 784
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 6 cut(s) 21, 24, 27, 634, 637, 846
FokI GGATG 3 cut(s) 684, 734, 933
Fsp4HI GCNGC 6 cut(s) 21, 24, 27, 634, 637, 846
FspBI CTAG 2 cut(s) 62, 209
GluI GCNGC 6 cut(s) 21, 24, 27, 634, 637, 846
GsaI CCCAGC 2 cut(s) 217, 864
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 3 cut(s) 189, 244, 416
HgaI GACGC 1 cut(s) 607
Hin1II CATG 3 cut(s) 415, 698, 852
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 3 cut(s) 68, 609, 878
HphI GGTGA 5 cut(s) 77, 150, 331, 460, 887
Hpy166II GTNNAC 1 cut(s) 890
Hpy188I TCNGA 2 cut(s) 290, 497
Hpy188III TCNNGA 2 cut(s) 308, 400
Hpy8I GTNNAC 1 cut(s) 890
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 4 cut(s) 168, 715, 749, 892
HpyCH4III ACNGT 3 cut(s) 42, 197, 515
HpyCH4IV ACGT 1 cut(s) 801
HpyCH4V TGCA 4 cut(s) 428, 698, 735, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 480, 741
HpyF3I CTNAG 6 cut(s) 11, 30, 257, 438, 740, 869
HpySE526I ACGT 1 cut(s) 801
Hsp92II CATG 3 cut(s) 415, 698, 852
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 3 cut(s) 462, 691, 937
LmnI GCTCC 2 cut(s) 593, 857
Lsp1109I GCAGC 6 cut(s) 32, 35, 38, 620, 623, 832
LweI GCATC 3 cut(s) 437, 712, 886
MaeI CTAG 2 cut(s) 62, 209
MaeII ACGT 1 cut(s) 801
MalI GATC 3 cut(s) 464, 693, 939
MboI GATC 3 cut(s) 462, 691, 937
MboII GAAGA 6 cut(s) 263, 292, 457, 542, 586, 809
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 1 cut(s) 937
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 8 cut(s) 51, 298, 386, 406, 519, 533, 778, 826
MluNI TGGCCA 1 cut(s) 416
MnlI CCTC 6 cut(s) 200, 284, 304, 346, 673, 825
Mox20I TGGCCA 1 cut(s) 416
MroXI GAANNNNTTC 2 cut(s) 284, 407
MscI TGGCCA 1 cut(s) 416
MseI TTAA 3 cut(s) 297, 368, 713
Msp20I TGGCCA 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 918
MwoI GCNNNNNNNGC 3 cut(s) 26, 480, 741
NdeI CATATG 1 cut(s) 784
NdeII GATC 3 cut(s) 462, 691, 937
NlaIII CATG 3 cut(s) 415, 698, 852
NlaIV GGNNCC 2 cut(s) 88, 334
NspI RCATGY 1 cut(s) 852
NspV TTCGAA 1 cut(s) 911
PdmI GAANNNNTTC 2 cut(s) 284, 407
PfeI GAWTC 3 cut(s) 68, 609, 878
PkrI GCNGC 6 cut(s) 22, 25, 28, 635, 638, 847
PshAI GACNNNNGTC 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 2 cut(s) 213, 860
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 88, 334
PspPI GGNCC 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 937
RsaI GTAC 4 cut(s) 39, 552, 767, 889
RsaNI GTAC 4 cut(s) 38, 551, 766, 888
SaqAI TTAA 3 cut(s) 297, 368, 713
SatI GCNGC 6 cut(s) 21, 24, 27, 634, 637, 846
Sau3AI GATC 3 cut(s) 462, 691, 937
Sau96I GGNCC 1 cut(s) 243
ScaI AGTACT 2 cut(s) 39, 552
ScrFI CCNGG 1 cut(s) 105
SfaNI GCATC 3 cut(s) 437, 712, 886
SfuI TTCGAA 1 cut(s) 911
Sse9I AATT 8 cut(s) 51, 298, 386, 406, 519, 533, 778, 826
SsiI CCGC 1 cut(s) 916
SspMI CTAG 2 cut(s) 62, 209
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 239, 772
TaaI ACNGT 3 cut(s) 42, 197, 515
TaiI ACGT 1 cut(s) 804
TaqI TCGA 1 cut(s) 911
TasI AATT 8 cut(s) 51, 298, 386, 406, 519, 533, 778, 826
TatI WGTACW 4 cut(s) 37, 550, 765, 887
TfiI GAWTC 3 cut(s) 68, 609, 878
Tru1I TTAA 3 cut(s) 297, 368, 713
Tru9I TTAA 3 cut(s) 297, 368, 713
TscAI CASTG 3 cut(s) 175, 202, 265
TseI GCWGC 6 cut(s) 20, 23, 26, 633, 636, 845
TspDTI ATGAA 4 cut(s) 46, 400, 771, 801
TspRI CASTG 3 cut(s) 175, 202, 265
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 2 cut(s) 533, 778
XceI RCATGY 1 cut(s) 852
XmnI GAANNNNTTC 2 cut(s) 284, 407
XspI CTAG 2 cut(s) 62, 209
ZrmI AGTACT 2 cut(s) 39, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.