Rh2AG117000

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000448
Physical Location & Seq
Forward (+)
10539538 .. 10540386
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG117000.1

Sequence Viewer

Length: 264 bp
ATGGCAAAGGCAGCTGATCTGTTGCTCTGTGTTTCGTCATTTTCTTTCTTAGTTATCTTTTATACTTCTGTGGTCGTACTCGTAGCCGTTTCTAATGCAGATGATCAGGTGGCTCCTAAACCTGCAGCTATTTTCATATTTGGAGACTCGACTGTGGATGTTGGCACCAACCAATTCTTGAACAATAGTCATTCGAGAGCTGATTTCTCTCCCAATGGAGTTGATTTTCCTTATTCTGTTCCGACGGGGAGAATTAATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

87

Amino Acids

9.31

Weight (kDa)

4.47

Isoelectric Point (pI)

14.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 164
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 3 cut(s) 14, 128, 200
AluI AGCT 3 cut(s) 14, 128, 200
Alw26I GTCTC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 11, 125
AseI ATTAAT 1 cut(s) 255
BanI GGYRCC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 23, 137
BceAI ACGGC 1 cut(s) 71
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 2 cut(s) 12, 126
BlsI GCNGC 2 cut(s) 13, 127
BmiI GGNNCC 2 cut(s) 114, 166
BseGI GGATG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 23, 137
BshNI GGYRCC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 16, 103
BspLI GGNNCC 2 cut(s) 114, 166
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 164
BssMI GATC 2 cut(s) 16, 103
Bst4CI ACNGT 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 19, 106
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 16, 103
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 23, 137
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 77
CviJI RGCY 5 cut(s) 14, 86, 113, 128, 200
CviKI_1 RGCY 5 cut(s) 14, 86, 113, 128, 200
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 18, 105
DpnII GATC 2 cut(s) 16, 103
FaiI YATR 2 cut(s) 63, 137
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 12, 126
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 12, 126
FspBI CTAG 1 cut(s) 262
GluI GCNGC 2 cut(s) 12, 126
HinfI GANTC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 178, 195
Hpy99I CGWCG 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 98, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 16, 103
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 2 cut(s) 92, 135
Lsp1109I GCAGC 2 cut(s) 23, 137
MaeI CTAG 1 cut(s) 262
MalI GATC 2 cut(s) 18, 105
MboI GATC 2 cut(s) 16, 103
MluCI AATT 3 cut(s) 173, 252, 256
MlyI GAGTC 1 cut(s) 140
MseI TTAA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 16, 103
NlaIV GGNNCC 2 cut(s) 114, 166
PkrI GCNGC 2 cut(s) 13, 127
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 114, 166
PstI CTGCAG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 12, 126
Sau3AI GATC 2 cut(s) 16, 103
SchI GAGTC 1 cut(s) 140
SetI ASST 5 cut(s) 16, 111, 124, 130, 202
SfcI CTRYAG 1 cut(s) 123
SgeI CNNG 7 cut(s) 92, 119, 134, 160, 190, 207, 258
Sse9I AATT 3 cut(s) 173, 252, 256
SspMI CTAG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 149, 194
TasI AATT 3 cut(s) 173, 252, 256
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 2 cut(s) 11, 125
TspDTI ATGAA 1 cut(s) 124
VspI ATTAAT 1 cut(s) 255
XspI CTAG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.