Rorug06G0125200

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000448
Physical Location & Seq
Reverse (-)
17396996 .. 17397957
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0125200.1

Sequence Viewer

Length: 492 bp
ATGGAATCGTCTAAGATTTCTTTCGCTCTCATTTCCCTCACAGCCATAGCCCTACTCGATTCGATTCATGCCCAAGACTCACCGCAAGACTTTCTTGATGCCCACAATGCTGCTAGAGCCGAGGTGGGTGTGGCGCCCTTGACTTGGGACGACCAAGTAGCACGTTTTGCGCAAGACTATGCCAATACTCATGTAGGCGACTGCGAACTCGTCCATTCTACCGATATGCGATACGGTGAAAACCTTGCAATGAACCCCGCCATTGACATGTCGGGCACAGAAGCAGTCAACCTGTGGGTGGGAGAGAAGCCCAACTACGATTACAACTCGAACTCTTGCGCCTCCGGCCAGGTGTGTGGACATTATACGCAAGTCGTTTGGCGTAACTCGTTACGAGTTGGGTGTGCCAAAGTGAGGTGCAACAGTGGAGGTACCTTCATTGGGTGCAACTATGACCCCCCGGGAAACTGGGATGGGGAGAAACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

163

Amino Acids

17.78

Weight (kDa)

4.67

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 151 1e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
Acc65I GGTACC 1 cut(s) 431
AccB1I GGYRCC 2 cut(s) 133, 431
AciI CCGC 2 cut(s) 83, 258
AcoI YGGCCR 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 4 cut(s) 144, 298, 414, 441
AflIII ACRYGT 1 cut(s) 267
AjnI CCWGG 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 431
AspLEI GCGC 3 cut(s) 136, 172, 341
AsuC2I CCSGG 2 cut(s) 461, 462
AsuHPI GGTGA 2 cut(s) 72, 248
AvaI CYCGRG 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 278
BanI GGYRCC 2 cut(s) 133, 431
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 350
BcnI CCSGG 2 cut(s) 461, 462
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 3 cut(s) 350, 461, 462
BmeT110I CYCGRG 1 cut(s) 460
BmiI GGNNCC 2 cut(s) 135, 433
BmrFI CCNGG 3 cut(s) 350, 461, 462
BmrI ACTGGG 1 cut(s) 478
BmsI GCATC 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 461, 462
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 120, 459, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 298, 414, 441
Bse1I ACTGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 120, 459, 460
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 4 cut(s) 144, 298, 414, 441
BseMI GCAATG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 348
BshNI GGYRCC 2 cut(s) 133, 431
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 2 cut(s) 345, 461
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 4 cut(s) 144, 298, 414, 441
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 278
BspACI CCGC 2 cut(s) 83, 258
BspANI GGCC 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 135, 433
BspT107I GGYRCC 2 cut(s) 133, 431
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 3 cut(s) 120, 459, 460
BssNI GRCGYC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 236, 425
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 478
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 3 cut(s) 136, 172, 341
BstMWI GCNNNNNNNGC 4 cut(s) 107, 116, 167, 345
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 3 cut(s) 348, 459, 460
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 356
BsuRI GGCC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 430
CfoI GCGC 3 cut(s) 136, 172, 341
Cfr9I CCCGGG 1 cut(s) 460
Csp6I GTAC 1 cut(s) 432
CviAII CATG 3 cut(s) 68, 191, 268
CviJI RGCY 5 cut(s) 44, 50, 119, 310, 348
CviKI_1 RGCY 5 cut(s) 44, 50, 119, 310, 348
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
FaeI CATG 3 cut(s) 71, 194, 271
FaiI YATR 8 cut(s) 47, 69, 180, 192, 227, 269, 366, 453
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 67, 190, 267
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 114
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 3 cut(s) 135, 171, 340
GluI GCNGC 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 348
HapII CCGG 2 cut(s) 345, 461
HhaI GCGC 3 cut(s) 136, 172, 341
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 71, 194, 271
Hin6I GCGC 3 cut(s) 134, 170, 339
HinP1I GCGC 3 cut(s) 134, 170, 339
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 4 cut(s) 5, 59, 64, 77
HpaII CCGG 2 cut(s) 345, 461
HphI GGTGA 2 cut(s) 72, 248
Hpy166II GTNNAC 2 cut(s) 289, 359
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 289, 359
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 2 cut(s) 236, 425
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 248, 420, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 116, 167, 345
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 71, 194, 271
HspAI GCGC 3 cut(s) 134, 170, 339
KasI GGCGCC 1 cut(s) 133
KpnI GGTACC 1 cut(s) 435
LpnPI CCDG 6 cut(s) 305, 335, 358, 362, 454, 474
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 383, 390
MhlI GDGCHC 1 cut(s) 278
Mly113I GGCGCC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 5 cut(s) 47, 115, 352, 408, 422
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 2 cut(s) 345, 461
MspR9I CCNGG 3 cut(s) 350, 461, 462
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 107, 116, 167, 345
NarI GGCGCC 1 cut(s) 134
NciI CCSGG 2 cut(s) 461, 462
NlaIII CATG 3 cut(s) 71, 194, 271
NlaIV GGNNCC 2 cut(s) 135, 433
NmeAIII GCCGAG 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 171
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PfeI GAWTC 3 cut(s) 5, 59, 64
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 135, 433
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 266
SatI GCNGC 1 cut(s) 111
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 3 cut(s) 350, 461, 462
SduI GDGCHC 1 cut(s) 278
SetI ASST 9 cut(s) 126, 166, 246, 294, 354, 419, 433, 437, 487
SfaNI GCATC 1 cut(s) 88
SfoI GGCGCC 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 266
SsiI CCGC 2 cut(s) 83, 258
SspDI GGCGCC 1 cut(s) 133
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 3 cut(s) 348, 459, 460
TaaI ACNGT 2 cut(s) 236, 425
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 57, 62, 329
TfiI GAWTC 3 cut(s) 5, 59, 64
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 56, 266, 427
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 1 cut(s) 430
XceI RCATGY 1 cut(s) 271
XmaI CCCGGG 1 cut(s) 460
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.