Rroxscaffold_2G00144390

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000448
Physical Location & Seq
Reverse (-)
82279967 .. 82287546
7580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144390.1

Sequence Viewer

Length: 648 bp
ATGAATGTGGATGCTCAGTTGTTCTACACTGCACTCCGACGTCTCTTGCAAAAGTTGAGTTCAGAGTGTGAGGGGTTGATGTATGCACTTGGAGATTCATATAAAATGACAAAATCTATTATCGACAACCCCGATCAGAATAATGATCAAAGGAGATCGACGAGGAGGAAACCCTCGATACCGGCATCGTTCCAAACTAACGAAGAAACTCAACTGTGGATGTTGGCAGTTGGCACCAATACCTTGTTGCTCCAAAGTGGAGCAAGGGCTGATTTCTCTCCAAATGGGGTTGATTTTCCTTATTCTGTGCCTACTGGGAGGTTCAGCAATGGCCTTAACAGCGCTGATCAAATCGTGGAGCGAACGCGGTGGAGCTCCGGTCGAAGCTACCGAAGGCGACAAAGAAGCTCCTCTCAAAGCTACCTCTCGATCGAAGCTCCGGTGGGACCACCGGAGAGAAAAGCGCTCTTGACGTGGGTGCCCGAGCATTTTCGGCTTCGGATTGCGGTTGGGGTGATTAAGGGGCTTCGGTATCTTCATGCATATGTGCCTCGGATTATGCATAACAACTTGAAGCCAAGAAATGTCATGTTGGATGCCGAGTTTGAACCGAGGTTGGCGATACTAGATAGAATCAAAGCTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

215

Amino Acids

24.61

Weight (kDa)

10.19

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 43
AccB1I GGYRCC 2 cut(s) 233, 478
AccII CGCG 1 cut(s) 367
AciI CCGC 2 cut(s) 367, 506
AcyI GRCGYC 1 cut(s) 40
AfeI AGCGCT 2 cut(s) 343, 465
AgsI TTSAA 2 cut(s) 574, 608
AjiI CACGTC 1 cut(s) 474
AluBI AGCT 6 cut(s) 375, 387, 408, 420, 437, 641
AluI AGCT 6 cut(s) 375, 387, 408, 420, 437, 641
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 482
Aor51HI AGCGCT 2 cut(s) 343, 465
AoxI GGCC 1 cut(s) 331
AspLEI GCGC 2 cut(s) 344, 466
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 2 cut(s) 233, 478
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 377
BclI TGATCA 2 cut(s) 145, 346
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 626
BfoI RGCGCY 2 cut(s) 345, 467
Bme18I GGWCC 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 482
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 3 cut(s) 235, 447, 480
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 194, 586
BmuI ACTGGG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 551, 611
BsaWI WCCGGW 3 cut(s) 377, 439, 451
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 551, 611
BseGI GGATG 3 cut(s) 16, 225, 601
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 2 cut(s) 178, 400
BseSI GKGCMC 1 cut(s) 483
BsgI GTGCAG 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 367
Bsh1285I CGRYCG 2 cut(s) 382, 432
BshFI GGCC 1 cut(s) 333
BshNI GGYRCC 2 cut(s) 233, 478
BsiEI CGRYCG 2 cut(s) 382, 432
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 4 cut(s) 182, 378, 440, 452
BslFI GGGAC 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 47
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 377, 483
Bsp143I GATC 5 cut(s) 133, 145, 155, 346, 429
BspACI CCGC 2 cut(s) 367, 506
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 235, 447, 480
BspT107I GGYRCC 2 cut(s) 233, 478
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 551, 611
BssMI GATC 5 cut(s) 133, 145, 155, 346, 429
BssNI GRCGYC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 3 cut(s) 16, 225, 601
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 2 cut(s) 345, 467
BstHHI GCGC 2 cut(s) 344, 466
BstKTI GATC 5 cut(s) 136, 148, 158, 349, 432
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 5 cut(s) 133, 145, 155, 346, 429
BstMCI CGRYCG 2 cut(s) 382, 432
BstMWI GCNNNNNNNGC 2 cut(s) 339, 493
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 1 cut(s) 367
BsuRI GGCC 1 cut(s) 333
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 3 cut(s) 16, 225, 601
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CfoI GCGC 2 cut(s) 344, 466
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 446
CviAII CATG 2 cut(s) 539, 589
DdeI CTNAG 1 cut(s) 15
DpnI GATC 5 cut(s) 135, 147, 157, 348, 431
DpnII GATC 5 cut(s) 133, 145, 155, 346, 429
Ecl136II GAGCTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 446
Eco47III AGCGCT 2 cut(s) 343, 465
Eco53kI GAGCTC 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 375
EcoT22I ATGCAT 2 cut(s) 544, 564
EcoT38I GRGCYC 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 2 cut(s) 542, 592
FaiI YATR 9 cut(s) 84, 100, 102, 540, 544, 546, 560, 564, 590
FaqI GGGAC 1 cut(s) 459
FatI CATG 2 cut(s) 538, 588
FauNDI CATATG 1 cut(s) 544
FbaI TGATCA 2 cut(s) 145, 346
FokI GGATG 3 cut(s) 23, 232, 608
FriOI GRGCYC 1 cut(s) 377
FspBI CTAG 1 cut(s) 626
GlaI GCGC 2 cut(s) 343, 465
HaeII RGCGCY 2 cut(s) 345, 467
HaeIII GGCC 1 cut(s) 333
HapII CCGG 4 cut(s) 182, 378, 440, 452
HhaI GCGC 2 cut(s) 344, 466
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 2 cut(s) 542, 592
Hin6I GCGC 2 cut(s) 342, 464
HinP1I GCGC 2 cut(s) 342, 464
HinfI GANTC 2 cut(s) 95, 633
HpaII CCGG 4 cut(s) 182, 378, 440, 452
HphI GGTGA 1 cut(s) 526
Hpy188I TCNGA 5 cut(s) 38, 64, 138, 501, 555
Hpy188III TCNNGA 2 cut(s) 427, 469
Hpy99I CGWCG 2 cut(s) 42, 163
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 2 cut(s) 40, 473
HpyCH4V TGCA 5 cut(s) 32, 49, 86, 542, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 493
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 2 cut(s) 40, 473
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 2 cut(s) 542, 592
HspAI GCGC 2 cut(s) 342, 464
Ksp22I TGATCA 2 cut(s) 145, 346
Kzo9I GATC 5 cut(s) 133, 145, 155, 346, 429
LmnI GCTCC 7 cut(s) 255, 260, 358, 372, 380, 413, 442
LpnPI CCDG 5 cut(s) 195, 300, 391, 453, 465
LweI GCATC 2 cut(s) 194, 586
MaeI CTAG 1 cut(s) 626
MaeII ACGT 2 cut(s) 40, 473
MalI GATC 5 cut(s) 135, 147, 157, 348, 431
MboI GATC 5 cut(s) 133, 145, 155, 346, 429
MboII GAAGA 2 cut(s) 215, 527
MhlI GDGCHC 2 cut(s) 377, 483
MmeI TCCRAC 2 cut(s) 61, 573
MnlI CCTC 9 cut(s) 64, 156, 159, 184, 312, 421, 434, 561, 606
Mph1103I ATGCAT 2 cut(s) 544, 564
MseI TTAA 2 cut(s) 336, 519
MslI CAYNNNNRTG 1 cut(s) 543
MspI CCGG 4 cut(s) 182, 378, 440, 452
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 339, 493
NdeI CATATG 1 cut(s) 544
NdeII GATC 5 cut(s) 133, 145, 155, 346, 429
NlaIII CATG 2 cut(s) 542, 592
NlaIV GGNNCC 3 cut(s) 235, 447, 480
NmeAIII GCCGAG 1 cut(s) 625
NsiI ATGCAT 2 cut(s) 544, 564
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 388
PfeI GAWTC 2 cut(s) 95, 633
Ple19I CGATCG 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 235, 447, 480
PspPI GGNCC 1 cut(s) 446
PvuI CGATCG 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 543
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 336, 519
Sau3AI GATC 5 cut(s) 133, 145, 155, 346, 429
Sau96I GGNCC 1 cut(s) 446
SduI GDGCHC 2 cut(s) 377, 483
SfaNI GCATC 2 cut(s) 194, 586
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 543
SsiI CCGC 2 cut(s) 367, 506
SspMI CTAG 1 cut(s) 626
SstI GAGCTC 1 cut(s) 377
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 2 cut(s) 43, 476
TaqI TCGA 6 cut(s) 123, 158, 176, 382, 428, 432
TfiI GAWTC 2 cut(s) 95, 633
Tru1I TTAA 2 cut(s) 336, 519
Tru9I TTAA 2 cut(s) 336, 519
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 17, 87, 527
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 446
XspI CTAG 1 cut(s) 626
ZraI GACGTC 1 cut(s) 41
Zsp2I ATGCAT 2 cut(s) 544, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.