Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000448

Physical Location & Seq

Genomic Coordinates Forward (+)

14639972 .. 14641495

Gene Structure 1524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGACCGTTGACTTGAGCCGGGAGAAGGACGGGGTTTCGGAGGGCTCGGCATCAATGAGGGCAGGTGGTGAATGTGAGCGGAGCGAACGCGGTGGAGCTCCGGTCGAAGCTACCGAAGGCGATGAAGAAGCTCCGCTTGAAGCTACCTCTCCGATCAAAGCTCCGGTTGGACCACCGGCGAGAAAAGCGGCTCTTGACGTGGGTGCCCGAGCATTTTCGGCTTCGATTGCGGTTGGGGTGATTAAGGGGCTTCGGTATCTTCATGCATATGTGCCTCGGATTATGCATAACAACTTGAAGCCGAGAAATGTCATGTTGGATGCGAGTTTGAATCGAGGTTGGCGGATACCGGATAGAATCAAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

122

Amino Acids

12.99

Weight (kDa)

8.89

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica	MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica	Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis	pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis	RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata	RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora	Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii	Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa	Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha	Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana	Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	1 cut(s)	90
AciI	CCGC	6 cut(s)	79, 90, 134, 188, 230, 343
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	140, 298, 331
AjiI	CACGTC	1 cut(s)	199
AluBI	AGCT	5 cut(s)	98, 110, 131, 143, 161
AluI	AGCT	5 cut(s)	98, 110, 131, 143, 161
Alw21I	GWGCWC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	80, 250
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	2 cut(s)	47, 100
Bbv12I	GWGCWC	1 cut(s)	100
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	59, 310
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	3 cut(s)	100, 163, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	5 cut(s)	19, 101, 164, 176, 350
BslI	CCNNNNNNNGG	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	47, 100, 208
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	79, 90, 134, 188, 230, 343
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 218, 227
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	2 cut(s)	263, 313
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	2 cut(s)	47, 100
Eco47I	GGWCC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	98
EcoT22I	ATGCAT	2 cut(s)	268, 288
EcoT38I	GRGCYC	2 cut(s)	47, 100
FaeI	CATG	2 cut(s)	266, 316
FaiI	YATR	6 cut(s)	264, 268, 270, 284, 288, 314
FalI	AAGNNNNNCTT	4 cut(s)	120, 152, 177, 209
FatI	CATG	2 cut(s)	262, 312
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	2 cut(s)	47, 100
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	5 cut(s)	19, 101, 164, 176, 350
Hin1II	CATG	2 cut(s)	266, 316
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	331, 357
HpaII	CCGG	5 cut(s)	19, 101, 164, 176, 350
HphI	GGTGA	2 cut(s)	80, 250
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	40, 153, 279
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	19, 110
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	266, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 218, 227
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	266, 316
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	5 cut(s)	81, 95, 103, 136, 166
LpnPI	CCDG	6 cut(s)	32, 48, 114, 177, 189, 363
LweI	GCATC	2 cut(s)	59, 310
MaeI	CTAG	1 cut(s)	367
MaeII	ACGT	1 cut(s)	198
MalI	GATC	1 cut(s)	155
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	137, 251
MhlI	GDGCHC	3 cut(s)	47, 100, 208
MmeI	TCCRAC	2 cut(s)	148, 297
MnlI	CCTC	5 cut(s)	34, 51, 157, 285, 329
Mph1103I	ATGCAT	2 cut(s)	268, 288
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	5 cut(s)	19, 101, 164, 176, 350
MspR9I	CCNGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	185, 218, 227
NciI	CCSGG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	266, 316
NlaIV	GGNNCC	1 cut(s)	205
NmeAIII	GCCGAG	2 cut(s)	26, 327
NsiI	ATGCAT	2 cut(s)	268, 288
PaqCI	CACCTGC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	331, 357
PkrI	GCNGC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	3 cut(s)	47, 100, 208
SetI	ASST	9 cut(s)	67, 100, 112, 133, 145, 149, 163, 201, 340
SfaNI	GCATC	2 cut(s)	59, 310
SgrAI	CRCCGGYG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SsiI	CCGC	6 cut(s)	79, 90, 134, 188, 230, 343
SspMI	CTAG	1 cut(s)	367
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	105, 224, 334
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	331, 357
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	138, 251
VpaK11BI	GGWCC	1 cut(s)	170
XspI	CTAG	1 cut(s)	367
Zsp2I	ATGCAT	2 cut(s)	268, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.