Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000448

Physical Location & Seq

Genomic Coordinates Forward (+)

9931325 .. 9934051

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1121900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTCAGAGTCTGATATCAGTACTTTCTCTTTGGCTCGTTGTATTTCTGGGTTGCATTGGTTTGCTTGAATGTTCTCAACCAACTTTGCCTGCCATTTACGTGTTTGGTGACTCCACAGTAGATGTTGGAACTAACCAGTACTTGCCTAAAGCTGAAGCAAGGGCCGACCACCCTTTTTATGGGATTGATTTTCCTCACTCTACAGCGACGGGAAGATTTAGCAACGGCTTGAATATTGTTGATTATCTTGCCAAGTTTCTGGGTTTCGAGCTGAGTCCGCCACCTTTTCTCTCTCTTTTGGACAAGAAGGAGGGAATTTACGGGAAGATCATTTTGCTAAGTAAAGGAGTCAATTTCGCTTCCGGAGGTTCAGGAATTCTGGATGAAACTGGAAAACGAAAGTGGGGAAATGTCGTCGCCCTTGGAGATCAGGTCCAGCAGTTTGCAAGAGTACATGACATTATATCAAAATTACAGGGTGAGGGTGGATTGGCTAATATATCAAAGTCTTTCTTCCTCATCAGCGTCGGAAGCAATGATATCCTCGAACATTTTCTTACTAACCAATCTACTTCTGCAAAACTGAATATCGCCACTCTCATGTCCACTTATGAAAGTCGATTAAGGAACCTAATTGACCTTGGAGCCAAAAGATTTGGGATTATTAGTGTTCCCCCAGTTGGTTGCGTCCCATTGGTGCTTAATTCTACTCAAGATGGTAGCTGTTCTGAGCCCGTGAATCAATATGCCATATTGTTTTATAAGGCACTTCAAGGAGTCTTGCTGAAGTTAAGCGCAGAATGCCAAGAGATGAAATATGCACTTGCAGATGCATATACAATGACCACACTCATCATAAAAGACCCTAAACAATTTGGTAATTACTTAAACATCTTAAATTATTCTTTCAGTCTTTTGGTAGCGTATCACAAAAATAGTATAGAATGGTTTGAGGAGGCGACAAAAGCTTGTTGTGGAAAAGGAAATTTTAATGCAGAGCCATGCACACCAGAATCGGATTTGTGTAAAGATCGCGATGTCTACTTGTTCTGGGATCAATACCATCCAACACAAGCTGCGTCTCATCTTGCAGCTCAAACTCTTCATGCTGGTGGTGGATTCGTGGCACCCATGACTTTTGGTCAATTGGCCTCACTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

389

Amino Acids

42.28

Weight (kDa)

5.91

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	33 - 367	3.4e-28	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000448)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica	MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica	Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis	pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis	RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata	RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora	Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii	Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa	Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha	Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana	Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	1129
AccI	GTMKAC	1 cut(s)	1044
AccII	CGCG	1 cut(s)	1038
AccIII	TCCGGA	1 cut(s)	365
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	1065
AcsI	RAATTY	3 cut(s)	318, 378, 988
AcuI	CTGAAG	2 cut(s)	177, 809
AfaI	GTAC	3 cut(s)	24, 143, 456
AfiI	CCNNNNNNNGG	2 cut(s)	182, 683
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	71, 235, 776
AhdI	GACNNNNNGTC	1 cut(s)	1143
AluBI	AGCT	6 cut(s)	155, 274, 726, 971, 1079, 1097
AluI	AGCT	6 cut(s)	155, 274, 726, 971, 1079, 1097
Alw26I	GTCTC	1 cut(s)	1089
AlwI	GGATC	1 cut(s)	1065
AlwNI	CAGNNNCTG	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	365
AoxI	GGCC	2 cut(s)	165, 1152
ApeKI	GCWGC	2 cut(s)	1079, 1094
ApoI	RAATTY	3 cut(s)	318, 378, 988
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	2 cut(s)	165, 436
AsuHPI	GGTGA	2 cut(s)	122, 494
AvaII	GGWCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	1129
BanII	GRGCYC	1 cut(s)	738
BbvI	GCAGC	2 cut(s)	1066, 1106
BccI	CCATC	2 cut(s)	713, 1074
BceAI	ACGGC	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	1089
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	1080, 1095
BlsI	GCNGC	2 cut(s)	1081, 1096
BmcAI	AGTACT	2 cut(s)	24, 143
Bme18I	GGWCC	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	1143
BmgT120I	GGNCC	2 cut(s)	165, 436
BmiI	GGNNCC	3 cut(s)	632, 649, 1131
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	1 cut(s)	823
BmuI	ACTGGG	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	424, 643
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 683
Bse1I	ACTGG	3 cut(s)	139, 397, 680
Bse3DI	GCAATG	1 cut(s)	544
BseAI	TCCGGA	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	424, 643
BseGI	GGATG	2 cut(s)	391, 1066
BseLI	CCNNNNNNNGG	2 cut(s)	182, 683
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	3 cut(s)	20, 266, 723
BseNI	ACTGG	3 cut(s)	139, 397, 680
BseRI	GAGGAG	1 cut(s)	971
BseXI	GCAGC	2 cut(s)	1066, 1106
Bsh1236I	CGCG	1 cut(s)	1038
BshFI	GGCC	2 cut(s)	167, 1154
BshNI	GGYRCC	1 cut(s)	1129
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	182, 683
BsmAI	GTCTC	1 cut(s)	1089
BsmBI	CGTCTC	1 cut(s)	1089
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	2 cut(s)	167, 1154
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	330, 430, 1033, 1057
Bsp68I	TCGCGA	1 cut(s)	1038
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	2 cut(s)	167, 1154
BspCNI	CTCAG	3 cut(s)	19, 267, 724
BspEI	TCCGGA	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	1038
BspLI	GGNNCC	3 cut(s)	632, 649, 1131
BspPI	GGATC	1 cut(s)	1065
BspT107I	GGYRCC	1 cut(s)	1129
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	139, 397, 680
BssECI	CCNNGG	2 cut(s)	424, 643
BssMI	GATC	4 cut(s)	330, 430, 1033, 1057
BssT1I	CCWWGG	2 cut(s)	424, 643
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	1110
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	6, 275, 341, 732
BstF5I	GGATG	2 cut(s)	391, 1066
BstFNI	CGCG	1 cut(s)	1038
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	4 cut(s)	333, 433, 1036, 1060
BstMAI	GTCTC	1 cut(s)	1089
BstMBI	GATC	4 cut(s)	330, 430, 1033, 1057
BstMWI	GCNNNNNNNGC	5 cut(s)	280, 534, 804, 968, 1160
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	1038
BstV1I	GCAGC	2 cut(s)	1066, 1106
BstXI	CCANNNNNNTGG	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	167, 1154
BtgZI	GCGATG	1 cut(s)	1053
BtsCI	GGATG	2 cut(s)	391, 1066
BtuMI	TCGCGA	1 cut(s)	1038
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	800
Cfr13I	GGNCC	2 cut(s)	165, 436
CseI	GACGC	3 cut(s)	517, 679, 1071
Csp6I	GTAC	3 cut(s)	23, 142, 455
CviAII	CATG	6 cut(s)	458, 604, 1005, 1109, 1135, 1164
CviQI	GTAC	3 cut(s)	23, 142, 455
DdeI	CTNAG	4 cut(s)	6, 275, 341, 732
DpnI	GATC	4 cut(s)	332, 432, 1035, 1059
DpnII	GATC	4 cut(s)	330, 430, 1033, 1057
DriI	GACNNNNNGTC	1 cut(s)	1143
Eam1104I	CTCTTC	1 cut(s)	1110
Eam1105I	GACNNNNNGTC	1 cut(s)	1143
EarI	CTCTTC	1 cut(s)	1110
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	424, 643
Eco24I	GRGCYC	1 cut(s)	738
Eco32I	GATATC	2 cut(s)	18, 544
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	177, 809
EcoRI	GAATTC	1 cut(s)	378
EcoRV	GATATC	2 cut(s)	18, 544
EcoT14I	CCWWGG	2 cut(s)	424, 643
EcoT22I	ATGCAT	1 cut(s)	838
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	424, 643
Esp3I	CGTCTC	1 cut(s)	1089
FaeI	CATG	6 cut(s)	461, 607, 1008, 1112, 1138, 1167
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	6 cut(s)	457, 603, 1004, 1108, 1134, 1163
FblI	GTMKAC	1 cut(s)	1044
Fnu4HI	GCNGC	2 cut(s)	1080, 1095
FokI	GGATG	2 cut(s)	398, 1053
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	2 cut(s)	1080, 1095
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	2 cut(s)	1080, 1095
HaeIII	GGCC	2 cut(s)	167, 1154
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	3 cut(s)	517, 679, 1071
HhaI	GCGC	1 cut(s)	800
Hin1II	CATG	6 cut(s)	461, 607, 1008, 1112, 1138, 1167
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HindIII	AAGCTT	1 cut(s)	969
HinfI	GANTC	8 cut(s)	10, 113, 277, 351, 742, 780, 1016, 1122
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	122, 494
Hpy166II	GTNNAC	2 cut(s)	609, 1045
Hpy188I	TCNGA	5 cut(s)	9, 15, 533, 733, 1021
Hpy188III	TCNNGA	5 cut(s)	366, 375, 383, 716, 1037
Hpy8I	GTNNAC	2 cut(s)	609, 1045
Hpy99I	CGWCG	3 cut(s)	214, 422, 533
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	5 cut(s)	280, 534, 804, 968, 1160
HpyF3I	CTNAG	4 cut(s)	6, 275, 341, 732
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	461, 607, 1008, 1112, 1138, 1167
HspAI	GCGC	1 cut(s)	798
Kpn2I	TCCGGA	1 cut(s)	365
Kzo9I	GATC	4 cut(s)	330, 430, 1033, 1057
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	2 cut(s)	1066, 1106
LweI	GCATC	1 cut(s)	823
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	4 cut(s)	332, 432, 1035, 1059
MboI	GATC	4 cut(s)	330, 430, 1033, 1057
MboII	GAAGA	4 cut(s)	228, 340, 508, 1097
MfeI	CAATTG	1 cut(s)	1148
MhlI	GDGCHC	1 cut(s)	738
MlyI	GAGTC	5 cut(s)	19, 107, 286, 360, 789
MmeI	TCCRAC	3 cut(s)	109, 511, 1094
MnlI	CCTC	9 cut(s)	207, 307, 362, 478, 530, 557, 949, 952, 1165
Mph1103I	ATGCAT	1 cut(s)	838
MroI	TCCGGA	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	6 cut(s)	626, 705, 794, 890, 899, 993
MslI	CAYNNNNRTG	4 cut(s)	101, 602, 1113, 1162
MspI	CCGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	1148
Mva1269I	GAATGC	1 cut(s)	809
MvnI	CGCG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	5 cut(s)	280, 534, 804, 968, 1160
NdeII	GATC	4 cut(s)	330, 430, 1033, 1057
NlaIII	CATG	6 cut(s)	461, 607, 1008, 1112, 1138, 1167
NlaIV	GGNNCC	3 cut(s)	632, 649, 1131
NmuCI	GTSAC	1 cut(s)	110
NruI	TCGCGA	1 cut(s)	1038
NsiI	ATGCAT	1 cut(s)	838
PctI	GAATGC	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	742, 1016, 1122
PkrI	GCNGC	2 cut(s)	1081, 1096
PleI	GAGTC	5 cut(s)	18, 107, 285, 359, 788
PpsI	GAGTC	5 cut(s)	18, 107, 285, 359, 788
Ppu21I	YACGTR	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	765
PspN4I	GGNNCC	3 cut(s)	632, 649, 1131
PspPI	GGNCC	2 cut(s)	165, 436
PstNI	CAGNNNCTG	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	1038
RsaI	GTAC	3 cut(s)	24, 143, 456
RsaNI	GTAC	3 cut(s)	23, 142, 455
RseI	CAYNNNNRTG	4 cut(s)	101, 602, 1113, 1162
SaqAI	TTAA	6 cut(s)	626, 705, 794, 890, 899, 993
SatI	GCNGC	2 cut(s)	1080, 1095
Sau3AI	GATC	4 cut(s)	330, 430, 1033, 1057
Sau96I	GGNCC	2 cut(s)	165, 436
ScaI	AGTACT	2 cut(s)	24, 143
SchI	GAGTC	5 cut(s)	19, 107, 286, 360, 789
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	1 cut(s)	823
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	4 cut(s)	101, 602, 1113, 1162
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
SsiI	CCGC	1 cut(s)	281
SspI	AATATT	1 cut(s)	238
StyI	CCWWGG	2 cut(s)	424, 643
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	270, 549, 622
TatI	WGTACW	3 cut(s)	22, 141, 454
TfiI	GAWTC	3 cut(s)	742, 1016, 1122
Tru1I	TTAA	6 cut(s)	626, 705, 794, 890, 899, 993
Tru9I	TTAA	6 cut(s)	626, 705, 794, 890, 899, 993
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	1079, 1094
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	402, 630, 830, 1097
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	3 cut(s)	318, 378, 988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	1044
XmnI	GAANNNNTTC	1 cut(s)	555
ZrmI	AGTACT	2 cut(s)	24, 143
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.