Rh2CG120900

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000448
Physical Location & Seq
Forward (+)
10703229 .. 10703663
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG120900.1

Sequence Viewer

Length: 345 bp
ATGTCTATCATTTCCTTGGGGGAACAAGTGCAGCAATTCCAAACTTTACGGAACAAAATCTCAGAATTATTGGGTGCTGGTGGATTGGCTAATATTTCTCAGTCTCTCTTTGTCATCAGCGTTGGAAGCAACGACATCTTTGAATTATTCGCTGCTAATAACCTGACTAAAAGAACCGAGCAAGACTACTTGAGCATACTCATCTCCTCTTACGAAACTCATTTAAGGAACTTATTTATGCTCGGAGCAATGAAGTTTGGGATTATCAGCGTCTCACAAATTGGGTGCCGCCCTGCCCAGCGAAAGCTCAGTGAAAGAGGCGGGTGTTTGGAGGCCATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

7.8

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 6 - 101 3.2e-07 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 285
AciI CCGC 2 cut(s) 289, 321
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 108, 277
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 31, 152
BanI GGYRCC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 43, 139
BcoDI GTCTC 2 cut(s) 108, 277
BisI GCNGC 3 cut(s) 32, 153, 289
BlsI GCNGC 3 cut(s) 33, 154, 290
BmiI GGNNCC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 75, 113, 322
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 43, 139
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 108, 277
BsmBI CGTCTC 1 cut(s) 277
BsnI GGCC 1 cut(s) 335
BspACI CCGC 2 cut(s) 289, 321
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 3 cut(s) 74, 112, 321
BspLI GGNNCC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 61, 99, 308
BstMAI GTCTC 2 cut(s) 108, 277
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 43, 139
BsuRI GGCC 1 cut(s) 335
BtsIMutI CAGTG 1 cut(s) 316
CseI GACGC 1 cut(s) 259
CviAII CATG 1 cut(s) 337
CviJI RGCY 3 cut(s) 89, 307, 335
CviKI_1 RGCY 3 cut(s) 89, 307, 335
DdeI CTNAG 3 cut(s) 61, 99, 308
Eco130I CCWWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 1 cut(s) 340
FaiI YATR 3 cut(s) 197, 239, 338
FatI CATG 1 cut(s) 336
FauI CCCGC 1 cut(s) 314
Fnu4HI GCNGC 3 cut(s) 32, 153, 289
Fsp4HI GCNGC 3 cut(s) 32, 153, 289
GluI GCNGC 3 cut(s) 32, 153, 289
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 335
HgaI GACGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 340
Hpy188I TCNGA 2 cut(s) 64, 245
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 3 cut(s) 61, 99, 308
Hsp92II CATG 1 cut(s) 340
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 4 cut(s) 63, 176, 306, 311
Lsp1109I GCAGC 2 cut(s) 43, 139
MluCI AATT 5 cut(s) 35, 65, 143, 279, 340
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 3 cut(s) 217, 311, 325
MseI TTAA 2 cut(s) 224, 343
MwoI GCNNNNNNNGC 1 cut(s) 126
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 287
PkrI GCNGC 3 cut(s) 33, 154, 290
PspFI CCCAGC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 224, 343
SatI GCNGC 3 cut(s) 32, 153, 289
SetI ASST 2 cut(s) 165, 309
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 5 cut(s) 35, 65, 143, 279, 340
SsiI CCGC 2 cut(s) 289, 321
SspI AATATT 1 cut(s) 94
StyI CCWWGG 1 cut(s) 15
TasI AATT 5 cut(s) 35, 65, 143, 279, 340
TauI GCSGC 1 cut(s) 291
Tru1I TTAA 2 cut(s) 224, 343
Tru9I TTAA 2 cut(s) 224, 343
TscAI CASTG 1 cut(s) 316
TseI GCWGC 2 cut(s) 31, 152
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.