Rmu_sc0009572.1_g000002

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009572.1
OG0000448
Physical Location & Seq
Reverse (-)
8219 .. 8506
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009572.1_g000002.1.cds

Sequence Viewer

Length: 288 bp
atggctaagtctgcaatattttctctttggctcaatattattgtgtatctcggcatacttggattgcacgcctcacactctcagccatctgtgccaccactttacatatttggtgactccacagctgatgttggaaccaacaattatttgcccaattccactgcgagggccgattccctttataacgggatcgattttcctttgcgtaaaccaactgggagatttagcaacggttacaacactattgattatctaggtattacatcctttgctgctgattgtaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

95

Amino Acids

10.3

Weight (kDa)

5.97

Isoelectric Point (pI)

24.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AclWI GGATC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
AlwI GGATC 1 cut(s) 197
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 125
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 94
BfaI CTAG 1 cut(s) 254
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 220
BseCI ATCGAT 1 cut(s) 192
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 165
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 6, 81
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 11, 91
BstV1I GCAGC 1 cut(s) 259
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 192
CviJI RGCY 5 cut(s) 5, 31, 85, 125, 170
CviKI_1 RGCY 5 cut(s) 5, 31, 85, 125, 170
DdeI CTNAG 2 cut(s) 6, 81
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
FaiI YATR 3 cut(s) 56, 107, 183
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 254
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 170
HinfI GANTC 2 cut(s) 116, 173
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 14, 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 91
HpyF3I CTNAG 2 cut(s) 6, 81
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 113, 233
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MluCI AATT 3 cut(s) 142, 154, 283
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 2 cut(s) 82, 159
MspA1I CMGCKG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 11, 91
NdeII GATC 1 cut(s) 189
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 125
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 1 cut(s) 110
SetI ASST 2 cut(s) 127, 259
SgeI CNNG 7 cut(s) 62, 71, 80, 177, 199, 228, 266
Sse9I AATT 3 cut(s) 142, 154, 283
SspI AATATT 2 cut(s) 18, 37
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 142, 154, 283
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 113
TspRI CASTG 1 cut(s) 166
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.