RchiOBHm_Chr2g0098061

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000448
Physical Location & Seq
Forward (+)
10540555 .. 10544700
4146 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47287

Sequence Viewer

Length: 1089 bp
ATGGCAAAGGCAGCTGATCTGTTGCTCTGTGTTTCGTCATTTTCTCTCTTAGTTATCTTTCATACTTCTCTGGTCGTACTCGTAGCCGTTACTAATGCAGATGATCAGGTGGCTCCTAAACCTGCAGCAATTTTCATATTTGGAGACTCGACTGTGGATGTTGGCATGCACCAACCAATGTTGCTTTATTTATTTCTTGTCGTGTTTTTCTTGTACGCTTGCATTGTTCTGCACTATGCAGTAAGACTATTTAGGTACAAGAGAAGTCCGCAACCATTCTTGTATTCTCTGAACCATCAATCCACTTTCAAAAGAGATATACTGCAGGGAGTTAATTTTGCATCCGGAGGATCCGGCATATTCAACCAAACAGGAAAAAAGGACTATGGAGAAGTTGTGCCACTGGGAGATCAGGTCAAACAATTTGCGACGGTTCGTGGAAATATCACAGAACTAATTGGTCTTGCGGCAACTGAGATAATGTTTTCCAAGTCTTTGTTCGTTATTAGTATAGGAAGCAATGACCTGTTCGAGTTAGTGAAATGGCATCCAAATATCACTTCCTTGGCTAAGGATGATGATGCGGGAAGCGTGAACACGATAGACTTATACAATCTGGGAGCTAGAAAATTCGGGATTATAAGTGTTCCTCCAATTGGATGCTGTCCTGCTGCACGTGTTGGACCAAAATCGAATGACTCCAGTGTTTGTGTAGAGGAGCTAAACAATCTTGCCTCAACATTTCTTGCAAAAACTGAGGATCTCCTCCAAAAATTGAGCTCAGAGTTGAAAGGACTCGTGTACTCGCTTGGAAATGCTTATGAAATGACTATGAGTATACTTGAAGACCCATTGGCGTTTGGCTTCAAGGACACTCAATCAGCCTGCTGTGGGTCAGGAAAGTTAAATGGAGTGTTTCCTTGCTTCTTCTTACTCGGTCCCAACCTTTGTCCGAATCGGCGGGAGGTTTTGTTCTGGGATTTGTATCATCCTACGGAATATGCTTCCGAGCTAGCAGCACTAACCCTTTATGGTGGAGGAACAAGATACGTCACACCTATAAACTTTAGTCAGTTGGGGTGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

39.61

Weight (kDa)

5.88

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 340 9.8e-22 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 641
Acc36I ACCTGC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 838
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 4 cut(s) 269, 467, 584, 961
AclWI GGATC 3 cut(s) 345, 358, 768
AcsI RAATTY 1 cut(s) 629
AcvI CACGTG 1 cut(s) 677
AfaI GTAC 4 cut(s) 78, 215, 257, 803
AfiI CCNNNNNNNGG 2 cut(s) 656, 891
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 5 cut(s) 310, 364, 790, 845, 868
AjuI GAANNNNNNNTTGG 4 cut(s) 482, 514, 544, 576
AloI GAACNNNNNNTCC 4 cut(s) 284, 316, 956, 988
AluBI AGCT 5 cut(s) 14, 623, 721, 780, 1012
AluI AGCT 5 cut(s) 14, 623, 721, 780, 1012
Alw21I GWGCWC 1 cut(s) 782
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 345, 358, 768
Aor13HI TCCGGA 1 cut(s) 344
ApeKI GCWGC 4 cut(s) 11, 125, 671, 1016
ApoI RAATTY 1 cut(s) 629
AspS9I GGNCC 2 cut(s) 683, 938
AsuNHI GCTAGC 1 cut(s) 1012
AvaII GGWCC 2 cut(s) 683, 938
BamHI GGATCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 782
BauI CACGAG 1 cut(s) 797
BbrPI CACGTG 1 cut(s) 677
BbsI GAAGAC 1 cut(s) 852
Bbv12I GWGCWC 1 cut(s) 782
BbvI GCAGC 4 cut(s) 23, 137, 658, 1028
BccI CCATC 1 cut(s) 303
BceAI ACGGC 1 cut(s) 71
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 624, 1013
BfmI CTRYAG 2 cut(s) 123, 323
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 5 cut(s) 12, 126, 468, 672, 1017
BlsI GCNGC 5 cut(s) 13, 127, 469, 673, 1018
Bme18I GGWCC 2 cut(s) 683, 938
BmgT120I GGNCC 2 cut(s) 683, 938
BmiI GGNNCC 3 cut(s) 114, 352, 940
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 4 cut(s) 350, 556, 571, 650
BmtI GCTAGC 1 cut(s) 1016
BmuI ACTGGG 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 852
BpmI CTGGAG 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 570
BsaAI YACGTR 1 cut(s) 677
BsaBI GATNNNNATC 1 cut(s) 984
BsaJI CCNNGG 1 cut(s) 564
BsaWI WCCGGW 1 cut(s) 344
BsaXI ACNNNNNCTCC 6 cut(s) 381, 399, 411, 429, 956, 986
Bsc4I CCNNNNNNNGG 2 cut(s) 656, 891
Bse1I ACTGG 2 cut(s) 408, 702
Bse3DI GCAATG 1 cut(s) 526
Bse8I GATNNNNATC 1 cut(s) 984
BseAI TCCGGA 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 6 cut(s) 163, 341, 547, 580, 665, 988
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 2 cut(s) 656, 891
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 3 cut(s) 465, 747, 795
BseNI ACTGG 2 cut(s) 408, 702
BseRI GAGGAG 2 cut(s) 731, 755
BseXI GCAGC 4 cut(s) 23, 137, 658, 1028
BsgI GTGCAG 2 cut(s) 215, 657
BsiHKAI GWGCWC 1 cut(s) 782
BsiSI CCGG 2 cut(s) 345, 354
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 2 cut(s) 656, 891
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 924
Bsp1286I GDGCHC 1 cut(s) 782
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 5 cut(s) 16, 103, 350, 409, 760
BspACI CCGC 4 cut(s) 269, 467, 584, 961
BspCNI CTCAG 3 cut(s) 466, 748, 794
BspEI TCCGGA 1 cut(s) 344
BspLI GGNNCC 3 cut(s) 114, 352, 940
BspMAI CTGCAG 2 cut(s) 127, 327
BspMI ACCTGC 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 1016
BspPI GGATC 3 cut(s) 345, 358, 768
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 2 cut(s) 408, 702
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 5 cut(s) 16, 103, 350, 409, 760
BssNAI GTATAC 1 cut(s) 839
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 839
Bst2BI CACGAG 1 cut(s) 797
Bst4CI ACNGT 2 cut(s) 154, 433
BstBAI YACGTR 1 cut(s) 677
BstC8I GCNNGC 4 cut(s) 167, 220, 886, 1014
BstDEI CTNAG 5 cut(s) 49, 474, 570, 756, 781
BstF5I GGATG 6 cut(s) 163, 341, 547, 580, 665, 988
BstKTI GATC 5 cut(s) 19, 106, 353, 412, 763
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 5 cut(s) 16, 103, 350, 409, 760
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 169
BstSFI CTRYAG 2 cut(s) 123, 323
BstV1I GCAGC 4 cut(s) 23, 137, 658, 1028
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 2 cut(s) 350, 760
BstYI RGATCY 2 cut(s) 350, 760
BstZ17I GTATAC 1 cut(s) 839
BtsCI GGATG 6 cut(s) 163, 341, 547, 580, 665, 988
BtsIMutI CAGTG 2 cut(s) 401, 709
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 167, 220, 886, 1014
Cfr13I GGNCC 2 cut(s) 683, 938
Csp6I GTAC 4 cut(s) 77, 214, 256, 802
CviAII CATG 1 cut(s) 166
CviQI GTAC 4 cut(s) 77, 214, 256, 802
DdeI CTNAG 5 cut(s) 49, 474, 570, 756, 781
DpnI GATC 5 cut(s) 18, 105, 352, 411, 762
DpnII GATC 5 cut(s) 16, 103, 350, 409, 760
Ecl136II GAGCTC 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 683, 938
Eco53kI GAGCTC 1 cut(s) 780
Eco72I CACGTG 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 1 cut(s) 169
FaqI GGGAC 1 cut(s) 924
FatI CATG 1 cut(s) 165
FauI CCCGC 2 cut(s) 577, 954
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 5 cut(s) 12, 126, 468, 672, 1017
FokI GGATG 6 cut(s) 170, 328, 534, 587, 672, 975
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 5 cut(s) 12, 126, 468, 672, 1017
FspBI CTAG 2 cut(s) 624, 1013
GluI GCNGC 5 cut(s) 12, 126, 468, 672, 1017
GsuI CTGGAG 1 cut(s) 685
HapII CCGG 2 cut(s) 345, 354
Hin1II CATG 1 cut(s) 169
HinfI GANTC 4 cut(s) 146, 698, 795, 955
HpaII CCGG 2 cut(s) 345, 354
Hpy166II GTNNAC 3 cut(s) 595, 802, 839
Hpy188I TCNGA 4 cut(s) 291, 784, 954, 1009
Hpy188III TCNNGA 3 cut(s) 345, 634, 897
Hpy8I GTNNAC 3 cut(s) 595, 802, 839
Hpy99I CGWCG 1 cut(s) 433
HpyCH4III ACNGT 2 cut(s) 154, 433
HpyCH4IV ACGT 2 cut(s) 676, 1050
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 5 cut(s) 49, 474, 570, 756, 781
HpySE526I ACGT 2 cut(s) 676, 1050
Hsp92II CATG 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 5 cut(s) 16, 103, 350, 409, 760
LmnI GCTCC 3 cut(s) 118, 620, 718
Lsp1109I GCAGC 4 cut(s) 23, 137, 658, 1028
LweI GCATC 4 cut(s) 350, 556, 571, 650
MaeI CTAG 2 cut(s) 624, 1013
MaeII ACGT 2 cut(s) 676, 1050
MaeIII GTNAC 2 cut(s) 88, 1051
MalI GATC 5 cut(s) 18, 105, 352, 411, 762
MboI GATC 5 cut(s) 16, 103, 350, 409, 760
MboII GAAGA 2 cut(s) 857, 919
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 350, 760
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 7 cut(s) 129, 334, 422, 456, 629, 654, 773
MlyI GAGTC 3 cut(s) 140, 692, 789
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 8 cut(s) 341, 660, 709, 745, 751, 776, 958, 1031
MroI TCCGGA 1 cut(s) 344
MseI TTAA 2 cut(s) 333, 905
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 2 cut(s) 345, 354
MunI CAATTG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 5 cut(s) 16, 103, 350, 409, 760
NheI GCTAGC 1 cut(s) 1012
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 3 cut(s) 114, 352, 940
NmuCI GTSAC 1 cut(s) 1051
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 955
PkrI GCNGC 5 cut(s) 13, 127, 469, 673, 1018
PleI GAGTC 3 cut(s) 140, 692, 789
PmaCI CACGTG 1 cut(s) 677
PmlI CACGTG 1 cut(s) 677
PpsI GAGTC 3 cut(s) 140, 692, 789
Ppu21I YACGTR 1 cut(s) 677
PsiI TTATAA 1 cut(s) 641
Psp124BI GAGCTC 1 cut(s) 782
PspCI CACGTG 1 cut(s) 677
PspN4I GGNNCC 3 cut(s) 114, 352, 940
PspPI GGNCC 2 cut(s) 683, 938
PstI CTGCAG 2 cut(s) 127, 327
PsuI RGATCY 2 cut(s) 350, 760
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 4 cut(s) 78, 215, 257, 803
RsaNI GTAC 4 cut(s) 77, 214, 256, 802
SacI GAGCTC 1 cut(s) 782
SaqAI TTAA 2 cut(s) 333, 905
SatI GCNGC 5 cut(s) 12, 126, 468, 672, 1017
Sau3AI GATC 5 cut(s) 16, 103, 350, 409, 760
Sau96I GGNCC 2 cut(s) 683, 938
SchI GAGTC 3 cut(s) 140, 692, 789
SduI GDGCHC 1 cut(s) 782
SfaNI GCATC 4 cut(s) 350, 556, 571, 650
SfcI CTRYAG 2 cut(s) 123, 323
SinI GGWCC 2 cut(s) 683, 938
SphI GCATGC 1 cut(s) 169
Sse9I AATT 7 cut(s) 129, 334, 422, 456, 629, 654, 773
SsiI CCGC 4 cut(s) 269, 467, 584, 961
SspMI CTAG 2 cut(s) 624, 1013
SstI GAGCTC 1 cut(s) 782
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 2 cut(s) 154, 433
TaiI ACGT 2 cut(s) 679, 1053
TaqI TCGA 3 cut(s) 149, 531, 692
TaqII GACCGA 1 cut(s) 926
TasI AATT 7 cut(s) 129, 334, 422, 456, 629, 654, 773
TatI WGTACW 1 cut(s) 801
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 1 cut(s) 955
Tru1I TTAA 2 cut(s) 333, 905
Tru9I TTAA 2 cut(s) 333, 905
TscAI CASTG 2 cut(s) 408, 709
TseFI GTSAC 1 cut(s) 1051
TseI GCWGC 4 cut(s) 11, 125, 671, 1016
Tsp45I GTSAC 1 cut(s) 1051
TspDTI ATGAA 3 cut(s) 50, 124, 837
TspGWI ACGGA 1 cut(s) 1010
TspRI CASTG 2 cut(s) 408, 709
VpaK11BI GGWCC 2 cut(s) 683, 938
XapI RAATTY 1 cut(s) 629
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 2 cut(s) 624, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.