FvH4_2g08040

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
6950261 .. 6952165
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08040.t1

Sequence Viewer

Length: 318 bp
ATGCTTGCTTGTTGGGCTGAAGATCCAAATGGGGACTATTTCAAGAAGCATCTTGCAAGGATCCCGGATTATTTATGGGTTGCTGAGGATGGGATGAAGATGCAAAGTTTTGGTAGTCAGCAATGGGATATTGGTTTTTCCATTCAAGCTCTGCTTGCTACTAATCTAACGGACGAGATTGGACCAGCGCTCGCTAGAGGACATGACTTTATCAAGAAATCTCAGGTCAAGGATAACCCATCTGGTGACTTCAAAAGCATGCACCGTCACATTTCTAAAGGATCGTGGACTTTCTCCAATCAAGATCATGGATGGTAG

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

6.16

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 17, 55, 68, 289
AcuI CTGAAG 1 cut(s) 39
AfeI AGCGCT 1 cut(s) 189
AgsI TTSAA 3 cut(s) 43, 146, 253
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 4 cut(s) 17, 55, 68, 289
Aor51HI AGCGCT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 3 cut(s) 83, 247, 306
BcnI CCSGG 1 cut(s) 65
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 2 cut(s) 58, 90
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 128
BseGI GGATG 3 cut(s) 94, 99, 317
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 75, 236
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp143I GATC 4 cut(s) 22, 60, 281, 304
BspCNI CTCAG 2 cut(s) 76, 235
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 4 cut(s) 17, 55, 68, 289
BsrDI GCAATG 1 cut(s) 128
BssMI GATC 4 cut(s) 22, 60, 281, 304
Bst4CI ACNGT 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 6, 156, 192, 260
BstDEI CTNAG 2 cut(s) 84, 222
BstF5I GGATG 3 cut(s) 94, 99, 317
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 4 cut(s) 25, 63, 284, 307
BstMBI GATC 4 cut(s) 22, 60, 281, 304
BstMWI GCNNNNNNNGC 2 cut(s) 14, 155
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 63
BstX2I RGATCY 2 cut(s) 22, 60
BstYI RGATCY 2 cut(s) 22, 60
BtsCI GGATG 3 cut(s) 94, 99, 317
Cac8I GCNNGC 4 cut(s) 6, 156, 192, 260
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 3 cut(s) 203, 259, 308
CviJI RGCY 2 cut(s) 17, 149
CviKI_1 RGCY 2 cut(s) 17, 149
DdeI CTNAG 2 cut(s) 84, 222
DpnI GATC 4 cut(s) 24, 62, 283, 306
DpnII GATC 4 cut(s) 22, 60, 281, 304
Eco47I GGWCC 1 cut(s) 182
Eco47III AGCGCT 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 39
FaeI CATG 3 cut(s) 206, 262, 311
FaiI YATR 4 cut(s) 76, 204, 260, 309
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 47
FatI CATG 3 cut(s) 202, 258, 307
FokI GGATG 2 cut(s) 101, 106
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 191
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 190
Hin1II CATG 3 cut(s) 206, 262, 311
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 43, 214, 302
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 56, 103, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 155
HpyF3I CTNAG 2 cut(s) 84, 222
Hsp92II CATG 3 cut(s) 206, 262, 311
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 4 cut(s) 22, 60, 281, 304
LpnPI CCDG 4 cut(s) 78, 198, 209, 228
LweI GCATC 2 cut(s) 58, 90
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 245, 266
MalI GATC 4 cut(s) 24, 62, 283, 306
MboI GATC 4 cut(s) 22, 60, 281, 304
MboII GAAGA 2 cut(s) 32, 109
MflI RGATCY 2 cut(s) 22, 60
MnlI CCTC 2 cut(s) 79, 191
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 14, 155
NciI CCSGG 1 cut(s) 65
NdeII GATC 4 cut(s) 22, 60, 281, 304
NlaIII CATG 3 cut(s) 206, 262, 311
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 245, 266
NspI RCATGY 1 cut(s) 262
PaeI GCATGC 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 2 cut(s) 22, 60
Sau3AI GATC 4 cut(s) 22, 60, 281, 304
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 65
SetI ASST 2 cut(s) 151, 228
SfaNI GCATC 2 cut(s) 58, 90
SinI GGWCC 1 cut(s) 182
SphI GCATGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 266
TseFI GTSAC 2 cut(s) 245, 266
Tsp45I GTSAC 2 cut(s) 245, 266
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 182
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.