Rh6DG174100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000689
Physical Location & Seq
Forward (+)
30620545 .. 30622043
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG174100.1

Sequence Viewer

Length: 228 bp
ATGCTCAATGGAATTCATCAATCAGATTACCCTGAAGACCAGATCTGCCTATCCGGAGTCCAGAAGCGCATACATTATGTCTTTCACAATCTCAGACTCACCAATCTCAATCAATCTCCATCAAGACTTGGTCGAAAAGAGGAAATTTGTCGTTCTCACTCAAAAACAAAGGTACACCTAAGAAAAATAGATTACTTTCATACCTTATATAGAGTTTCTTTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.97

Weight (kDa)

9.75

Isoelectric Point (pI)

64.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 53
AcsI RAATTY 2 cut(s) 12, 144
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 53
ApoI RAATTY 2 cut(s) 12, 144
AspLEI GCGC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 1 cut(s) 127
BglII AGATCT 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 53
BseMII CTCAG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 105
BspEI TCCGGA 1 cut(s) 53
BssMI GATC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 92, 179
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
CfoI GCGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 173
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 92, 179
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 12
FaiI YATR 5 cut(s) 71, 78, 201, 208, 210
GlaI GCGC 1 cut(s) 68
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 2 cut(s) 57, 96
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 25, 95
Hpy188III TCNNGA 3 cut(s) 54, 61, 123
Hpy8I GTNNAC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 92, 179
HspAI GCGC 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 45, 53, 67, 74
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 42
MluCI AATT 2 cut(s) 12, 144
MlyI GAGTC 2 cut(s) 66, 90
MnlI CCTC 1 cut(s) 133
MroI TCCGGA 1 cut(s) 53
MspI CCGG 1 cut(s) 54
NdeII GATC 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 129
PleI GAGTC 2 cut(s) 65, 90
PpsI GAGTC 2 cut(s) 65, 90
PsuI RGATCY 1 cut(s) 42
PsyI GACNNNGTC 1 cut(s) 129
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 42
SchI GAGTC 2 cut(s) 66, 90
SetI ASST 3 cut(s) 174, 180, 206
SgeI CNNG 6 cut(s) 44, 52, 66, 73, 135, 140
Sse9I AATT 2 cut(s) 12, 144
TaqI TCGA 1 cut(s) 133
TasI AATT 2 cut(s) 12, 144
TspDTI ATGAA 2 cut(s) 5, 188
Tth111I GACNNNGTC 1 cut(s) 129
XapI RAATTY 2 cut(s) 12, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.