Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

8167864 .. 8172093

Gene Structure 4230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1098500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAGGTTTAGTTTAATGCCTGATACAAGATTCAAAATTGAGTTTAGTCCCTTAGACAATGAGGCGCTGAGTTTGGACTGTTGCCATCATACTGTGCAGAGTCTGGGTACTCAATCTTGGGATATTGCTTATATCATTGAAGCTTTTCTTGCTGCCACTCGCAACCTAAGTGCTTCTGAGACTGGTCCCACACTTATGAAAGGACATGACTTCATAAAGAAATCCCAGGTGAGGGATAATCCTGTTGGTGATTTTAAGAGCATGTTTCGATGCACTTCGAAGGGATCATGGACTTTGTCTGATCAAGATCACGGATTGCCAGCTTCTGATTCCCTTTCAGAAAATCTGAAGTGTTGCCTACTACTCTCAATGATGCCATCAGAAATTGTTGGTGATAAAATCGAACTGGAGCGAGGATATGATGCTGTTAACTTCCTGCTCACTATGCAGAGTAAAAATGGTGGTGTATCAATATGGGAGCCAGCAGGAGCTCCATCATGGTTGGAGATGCTTAATCCCGTGGATTTTCTTGAGAACATCGTCATTGAGCATGAGTATGTTGAGCTCACTTCCTCGGCATTACAAACTATGGTTTTGTTCAAAAAGTTACATCCTGAGCATAGGAAGGAAGAGATAGAAGAATTTATTGTTCGCGCTGCACAATATCTTGAAGACACACAAAACCCTGATGGTTCATGGTATGCAGTTTGGGGAATTTGCTTCACATACGGTGCATGGTTTGCGCTTAAAGGTTTGGCAGCTGCTGGAAAAACTTATTACAATTGTCCGGCTATGCGCAATGGTGTTCGCTTTCTACTTACAACCCAAGGAGATGATGGTGGATGGGGAGAGAGCTACCTTTCATGCCCAAACAAGAAATTAATACCACTCGAAGGAAGAAGATCAAACTTAGTACAAACTGCATGGGCTTTAATGGGTTTAATTCATGCCCAGCAGGCAGAAAGAGACCCGACTCCTCTTCACCGTGCTGCGAAGCTGTTAATCAATTCTCAGATGGAGAACGGTGGATTCCCTCAACAGGAATTGACAGGTGGTTTCTTTAGTAATTGCATGTTACACTACGCAAATTATTGCATTACTTTCCCGTTAATGGCTCTTGCAGAATACTGCAGCTGCATGCAGGTTCCATTGGCTTCCGCCGCAGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009987 GO:0010263 GO:0010683 GO:0010685 GO:0010686 GO:0012505 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0022622 GO:0030054 GO:0031559 GO:0032501 GO:0032502 GO:0034074 GO:0034075 GO:0042299 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051746 GO:0055044 GO:0071704 GO:0080003 GO:0080011 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

391

Amino Acids

43.5

Weight (kDa)

5.25

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_C	PF13243	40 - 376	6.8e-46	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1154
Acc16I	TGCGCA	1 cut(s)	797
Acc36I	ACCTGC	2 cut(s)	1132, 1154
AccII	CGCG	1 cut(s)	654
AciI	CCGC	2 cut(s)	1158, 1161
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	641, 714
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	109, 915
AfiI	CCNNNNNNNGG	5 cut(s)	231, 232, 893, 1039, 1111
AgsI	TTSAA	4 cut(s)	34, 140, 601, 671
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	8 cut(s)	143, 323, 491, 565, 761, 855, 997, 1134
AluI	AGCT	8 cut(s)	143, 323, 491, 565, 761, 855, 997, 1134
Alw21I	GWGCWC	2 cut(s)	493, 567
Alw26I	GTCTC	2 cut(s)	173, 960
AlwI	GGATC	1 cut(s)	292
AlwNI	CAGNNNCTG	3 cut(s)	103, 326, 764
ApeKI	GCWGC	7 cut(s)	152, 656, 758, 761, 989, 1131, 1134
ApoI	RAATTY	2 cut(s)	641, 714
AseI	ATTAAT	1 cut(s)	881
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	4 cut(s)	67, 656, 745, 798
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	241, 260, 404, 974
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	493, 567
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	2 cut(s)	493, 567
BbvI	GCAGC	7 cut(s)	139, 643, 748, 770, 976, 1121, 1143
BccI	CCATC	7 cut(s)	93, 385, 502, 683, 830, 837, 1009
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	173, 960
BfmI	CTRYAG	1 cut(s)	1129
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	2 cut(s)	1132, 1154
BglI	GCCNNNNNGGC	1 cut(s)	956
BisI	GCNGC	8 cut(s)	153, 657, 759, 762, 990, 1132, 1135, 1161
BlsI	GCNGC	8 cut(s)	154, 658, 760, 763, 991, 1133, 1136, 1162
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	187, 480, 1146
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	4 cut(s)	260, 363, 412, 498
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	960
BsaJI	CCNNGG	4 cut(s)	225, 519, 573, 826
Bsc4I	CCNNNNNNNGG	5 cut(s)	231, 232, 893, 1039, 1111
Bse1I	ACTGG	2 cut(s)	187, 411
Bse3DI	GCAATG	1 cut(s)	805
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	225, 519, 573, 826
BseGI	GGATG	2 cut(s)	610, 848
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	5 cut(s)	231, 232, 893, 1039, 1111
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	4 cut(s)	59, 168, 606, 1025
BseNI	ACTGG	2 cut(s)	187, 411
BseRI	GAGGAG	1 cut(s)	966
BseXI	GCAGC	7 cut(s)	139, 643, 748, 770, 976, 1121, 1143
BseYI	CCCAGC	1 cut(s)	951
BsgI	GTGCAG	2 cut(s)	116, 642
Bsh1236I	CGCG	1 cut(s)	654
BsiHKAI	GWGCWC	2 cut(s)	493, 567
BsiSI	CCGG	1 cut(s)	788
BslFI	GGGAC	2 cut(s)	33, 171
BslI	CCNNNNNNNGG	5 cut(s)	231, 232, 893, 1039, 1111
BsmAI	GTCTC	2 cut(s)	173, 960
BsmFI	GGGAC	2 cut(s)	33, 171
Bso31I	GGTCTC	1 cut(s)	960
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	493, 567
Bsp143I	GATC	4 cut(s)	284, 301, 307, 902
BspACI	CCGC	2 cut(s)	1158, 1161
BspCNI	CTCAG	4 cut(s)	60, 169, 607, 1024
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	187, 480, 1146
BspMAI	CTGCAG	1 cut(s)	1133
BspMI	ACCTGC	2 cut(s)	1132, 1154
BspPI	GGATC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	960
BsrDI	GCAATG	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	187, 411
BssECI	CCNNGG	4 cut(s)	225, 519, 573, 826
BssMI	GATC	4 cut(s)	284, 301, 307, 902
BssT1I	CCWWGG	1 cut(s)	826
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	5 cut(s)	80, 94, 731, 986, 1025
Bst6I	CTCTTC	2 cut(s)	624, 984
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	4 cut(s)	321, 483, 957, 1139
BstDEI	CTNAG	7 cut(s)	52, 68, 167, 177, 615, 910, 1011
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	610, 848
BstFNI	CGCG	1 cut(s)	654
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	4 cut(s)	67, 656, 745, 798
BstKTI	GATC	4 cut(s)	287, 304, 310, 905
BstMAI	GTCTC	2 cut(s)	173, 960
BstMBI	GATC	4 cut(s)	284, 301, 307, 902
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 445, 740, 956, 1160
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	3 cut(s)	265, 1075, 1141
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	1129
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	7 cut(s)	139, 643, 748, 770, 976, 1121, 1143
BstV2I	GAAGAC	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	610, 848
BveI	ACCTGC	2 cut(s)	1132, 1154
Cac8I	GCNNGC	4 cut(s)	321, 483, 957, 1139
CaiI	CAGNNNCTG	3 cut(s)	103, 326, 764
CfoI	GCGC	4 cut(s)	67, 656, 745, 798
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	108, 914
CviQI	GTAC	2 cut(s)	108, 914
DdeI	CTNAG	7 cut(s)	52, 68, 167, 177, 615, 910, 1011
DpnI	GATC	4 cut(s)	286, 303, 309, 904
DpnII	GATC	4 cut(s)	284, 301, 307, 902
Eam1104I	CTCTTC	2 cut(s)	624, 984
EarI	CTCTTC	2 cut(s)	624, 984
EciI	GGCGGA	1 cut(s)	1147
Ecl136II	GAGCTC	2 cut(s)	491, 565
Eco130I	CCWWGG	1 cut(s)	826
Eco24I	GRGCYC	2 cut(s)	493, 567
Eco31I	GGTCTC	1 cut(s)	960
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	2 cut(s)	491, 565
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	2 cut(s)	491, 565
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	826
EcoT38I	GRGCYC	2 cut(s)	493, 567
ErhI	CCWWGG	1 cut(s)	826
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	2 cut(s)	33, 171
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	8 cut(s)	153, 657, 759, 762, 990, 1132, 1135, 1161
FokI	GGATG	2 cut(s)	597, 855
FriOI	GRGCYC	2 cut(s)	493, 567
Fsp4HI	GCNGC	8 cut(s)	153, 657, 759, 762, 990, 1132, 1135, 1161
FspI	TGCGCA	1 cut(s)	797
GlaI	GCGC	4 cut(s)	66, 655, 744, 797
GluI	GCNGC	8 cut(s)	153, 657, 759, 762, 990, 1132, 1135, 1161
GsaI	CCCAGC	1 cut(s)	955
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	68
HapII	CCGG	1 cut(s)	788
HhaI	GCGC	4 cut(s)	67, 656, 745, 798
Hin6I	GCGC	4 cut(s)	65, 654, 743, 796
HinP1I	GCGC	4 cut(s)	65, 654, 743, 796
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	5 cut(s)	30, 100, 329, 973, 1029
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	4 cut(s)	241, 260, 404, 974
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	7 cut(s)	178, 301, 328, 340, 348, 382, 1014
Hpy188III	TCNNGA	4 cut(s)	305, 530, 614, 668
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	274, 619, 887
HpyCH4III	ACNGT	5 cut(s)	80, 94, 731, 986, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 445, 740, 956, 1160
HpyF3I	CTNAG	7 cut(s)	52, 68, 167, 177, 615, 910, 1011
HspAI	GCGC	4 cut(s)	65, 654, 743, 796
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	284, 301, 307, 902
LmnI	GCTCC	4 cut(s)	409, 478, 488, 496
Lsp1109I	GCAGC	7 cut(s)	139, 643, 748, 770, 976, 1121, 1143
LweI	GCATC	4 cut(s)	260, 363, 412, 498
MaeIII	GTNAC	2 cut(s)	606, 1074
MalI	GATC	4 cut(s)	286, 303, 309, 904
MboI	GATC	4 cut(s)	284, 301, 307, 902
MboII	GAAGA	6 cut(s)	641, 650, 683, 909, 912, 971
MfeI	CAATTG	1 cut(s)	781
MhlI	GDGCHC	2 cut(s)	493, 567
MlyI	GAGTC	2 cut(s)	109, 967
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	6 cut(s)	55, 225, 407, 583, 987, 1044
MroXI	GAANNNNTTC	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	194, 555
MspA1I	CMGCKG	2 cut(s)	761, 1134
MspI	CCGG	1 cut(s)	788
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	5 cut(s)	149, 445, 740, 956, 1160
NdeII	GATC	4 cut(s)	284, 301, 307, 902
NlaIV	GGNNCC	3 cut(s)	187, 480, 1146
NmeAIII	GCCGAG	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	797
NspI	RCATGY	3 cut(s)	265, 1075, 1141
NspV	TTCGAA	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	1141
PaqCI	CACCTGC	1 cut(s)	1154
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	30, 329, 1029
PflFI	GACNNNGTC	1 cut(s)	295
PkrI	GCNGC	8 cut(s)	154, 658, 760, 763, 991, 1133, 1136, 1162
PleI	GAGTC	2 cut(s)	108, 967
PpsI	GAGTC	2 cut(s)	108, 967
PshBI	ATTAAT	1 cut(s)	881
Psp124BI	GAGCTC	2 cut(s)	493, 567
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	951
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	187, 480, 1146
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	1133
PstNI	CAGNNNCTG	3 cut(s)	103, 326, 764
PsyI	GACNNNGTC	1 cut(s)	295
PvuII	CAGCTG	2 cut(s)	761, 1134
RsaI	GTAC	2 cut(s)	109, 915
RsaNI	GTAC	2 cut(s)	108, 914
RseI	CAYNNNNRTG	2 cut(s)	194, 555
SacI	GAGCTC	2 cut(s)	493, 567
SatI	GCNGC	8 cut(s)	153, 657, 759, 762, 990, 1132, 1135, 1161
Sau3AI	GATC	4 cut(s)	284, 301, 307, 902
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	109, 967
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	493, 567
SfaNI	GCATC	4 cut(s)	260, 363, 412, 498
SfcI	CTRYAG	1 cut(s)	1129
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	194, 555
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SphI	GCATGC	1 cut(s)	1141
SsiI	CCGC	2 cut(s)	1158, 1161
SstI	GAGCTC	2 cut(s)	493, 567
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	826
TaaI	ACNGT	5 cut(s)	80, 94, 731, 986, 1025
TaqI	TCGA	4 cut(s)	268, 278, 402, 891
TatI	WGTACW	1 cut(s)	913
TauI	GCSGC	1 cut(s)	1163
TfiI	GAWTC	3 cut(s)	30, 329, 1029
TseI	GCWGC	7 cut(s)	152, 656, 758, 761, 989, 1131, 1134
TspDTI	ATGAA	5 cut(s)	202, 212, 684, 852, 935
TspGWI	ACGGA	1 cut(s)	327
Tth111I	GACNNNGTC	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	881
XapI	RAATTY	2 cut(s)	641, 714
XceI	RCATGY	3 cut(s)	265, 1075, 1141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XmnI	GAANNNNTTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.