Rh2DG488000

Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
70508294 .. 70525273
16980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG488000.1

Sequence Viewer

Length: 633 bp
ATGGGTCTAATTCATGGTCGACAGGGTGAGAGAGATCCAACTCCTATTCACCGTGCTGCAAGGGTCTTGATGAACGGTCAGTTGGATGATGGTGATTTTCCCCAACAGGAACTGGTGGGAGTTTTCATGAGGAATGCAATGTTACACTATGGAGGATATAGGAATGTTTTCCCATTGTGGGCTCGCGGAGAGTATCAGAAGAGAGTAAGGGCTGCAATAGCAGCCGTAAATCCAACTGATTGTTTCCCTTCAACTCTTGATCCATCTATTAAAGAAGCATTTGACGTGGCATATGACAATGTATGTGCATTTCATTTTGCCCAGAAGTCAGCAGAGAAAACTGTTGAGAATATGAAGGGTGTTAAATGTAAACAAGTGGCAAGAAGTATTGGTTCTGTAGGTTTTTATGTTCCAGGAGGAACTGCAGTTTTACCTTCTACTGCTCTGGTGCTTGCAGTTCCTGCTCAGATTGCTGGATCTAAAACCGTTGTACTTGTGACTCCCCCAAGTCAGGATGGCAGTATATGCAAGAAGTACTCTACTGTGCTAAGAAGGCTGGTGATATCTGCTATGGCTTGGGGTACAAAATCTTATCCAAAGGAGCAAGACATATTTTATTCCCTGGAGAGCTAA

Protein Analysis

210

Amino Acids

22.97

Weight (kDa)

9.17

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histidinol_dh PF00815 84 - 184 8e-27 Histidinol dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 186
AclWI GGATC 3 cut(s) 29, 254, 484
AfaI GTAC 3 cut(s) 492, 536, 583
AfiI CCNNNNNNNGG 2 cut(s) 178, 511
AgsI TTSAA 1 cut(s) 252
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 2 cut(s) 412, 621
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 1 cut(s) 630
AluI AGCT 1 cut(s) 630
AlwI GGATC 3 cut(s) 29, 254, 484
AlwNI CAGNNNCTG 2 cut(s) 112, 461
ApeKI GCWGC 3 cut(s) 56, 212, 221
Asp700I GAANNNNTTC 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 38, 41, 104, 571
BanII GRGCYC 1 cut(s) 184
BbvI GCAGC 3 cut(s) 43, 199, 233
BccI CCATC 3 cut(s) 83, 271, 509
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 414, 623
BfmI CTRYAG 2 cut(s) 396, 423
BisI GCNGC 3 cut(s) 57, 213, 222
BlsI GCNGC 3 cut(s) 58, 214, 223
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 2 cut(s) 414, 623
BmgBI CACGTC 1 cut(s) 286
BmrFI CCNGG 2 cut(s) 414, 623
BsaJI CCNNGG 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 511
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 414, 623
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 2 cut(s) 91, 520
BseLI CCNNNNNNNGG 2 cut(s) 178, 511
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 43, 199, 233
Bsh1236I CGCG 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 178, 511
BsmI GAATGC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 34, 259, 476
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 478
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 3 cut(s) 29, 254, 484
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 3 cut(s) 34, 259, 476
Bst2UI CCWGG 2 cut(s) 414, 623
Bst4CI ACNGT 5 cut(s) 53, 77, 343, 487, 544
Bst6I CTCTTC 1 cut(s) 194
BstAPI GCANNNNNTGC 2 cut(s) 461, 525
BstC8I GCNNGC 2 cut(s) 184, 453
BstDEI CTNAG 2 cut(s) 465, 548
BstF5I GGATG 2 cut(s) 91, 520
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 3 cut(s) 37, 262, 479
BstMBI GATC 3 cut(s) 34, 259, 476
BstMWI GCNNNNNNNGC 6 cut(s) 218, 221, 461, 470, 525, 553
BstNI CCWGG 2 cut(s) 414, 623
BstSCI CCNGG 2 cut(s) 412, 621
BstSFI CTRYAG 2 cut(s) 396, 423
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 43, 199, 233
BstX2I RGATCY 2 cut(s) 34, 476
BstYI RGATCY 2 cut(s) 34, 476
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 91, 520
Cac8I GCNNGC 2 cut(s) 184, 453
CaiI CAGNNNCTG 2 cut(s) 112, 461
CciI TCATGA 1 cut(s) 126
Csp6I GTAC 3 cut(s) 491, 535, 582
CviAII CATG 2 cut(s) 14, 127
CviJI RGCY 6 cut(s) 182, 212, 224, 556, 575, 630
CviKI_1 RGCY 6 cut(s) 182, 212, 224, 556, 575, 630
CviQI GTAC 3 cut(s) 491, 535, 582
DdeI CTNAG 2 cut(s) 465, 548
DpnI GATC 3 cut(s) 36, 261, 478
DpnII GATC 3 cut(s) 34, 259, 476
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 184
Eco32I GATATC 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 412, 621
EcoRV GATATC 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 2 cut(s) 17, 130
FatI CATG 2 cut(s) 13, 126
FauNDI CATATG 1 cut(s) 292
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 57, 213, 222
FokI GGATG 2 cut(s) 98, 527
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 3 cut(s) 57, 213, 222
GluI GCNGC 3 cut(s) 57, 213, 222
Hin1II CATG 2 cut(s) 17, 130
HincII GTYRAC 1 cut(s) 20
HindII GTYRAC 1 cut(s) 20
HinfI GANTC 1 cut(s) 499
HphI GGTGA 4 cut(s) 38, 41, 104, 571
Hpy166II GTNNAC 2 cut(s) 20, 371
Hpy188I TCNGA 2 cut(s) 198, 468
Hpy188III TCNNGA 4 cut(s) 67, 127, 257, 512
Hpy8I GTNNAC 2 cut(s) 20, 371
HpyAV CCTTC 4 cut(s) 258, 349, 444, 546
HpyCH4III ACNGT 5 cut(s) 53, 77, 343, 487, 544
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 7 cut(s) 59, 137, 215, 308, 425, 455, 528
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 221, 461, 470, 525, 553
HpyF3I CTNAG 2 cut(s) 465, 548
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 17, 130
Kzo9I GATC 3 cut(s) 34, 259, 476
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 3 cut(s) 43, 199, 233
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 141, 496
MalI GATC 3 cut(s) 36, 261, 478
MboI GATC 3 cut(s) 34, 259, 476
MboII GAAGA 1 cut(s) 211
MflI RGATCY 2 cut(s) 34, 476
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 3 cut(s) 62, 63, 257
MnlI CCTC 3 cut(s) 123, 146, 410
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 2 cut(s) 270, 363
MspR9I CCNGG 2 cut(s) 414, 623
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 2 cut(s) 414, 623
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 6 cut(s) 218, 221, 461, 470, 525, 553
NdeI CATATG 1 cut(s) 292
NdeII GATC 3 cut(s) 34, 259, 476
NlaIII CATG 2 cut(s) 17, 130
NmuCI GTSAC 1 cut(s) 496
PagI TCATGA 1 cut(s) 126
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 167
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 3 cut(s) 58, 214, 223
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 412, 621
PspGI CCWGG 2 cut(s) 412, 621
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 2 cut(s) 112, 461
PsuI RGATCY 2 cut(s) 34, 476
RsaI GTAC 3 cut(s) 492, 536, 583
RsaNI GTAC 3 cut(s) 491, 535, 582
SalI GTCGAC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 270, 363
SatI GCNGC 3 cut(s) 57, 213, 222
Sau3AI GATC 3 cut(s) 34, 259, 476
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 2 cut(s) 414, 623
SduI GDGCHC 1 cut(s) 184
SetI ASST 4 cut(s) 288, 403, 436, 632
SfcI CTRYAG 2 cut(s) 396, 423
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 412, 621
TaaI ACNGT 5 cut(s) 53, 77, 343, 487, 544
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 9
TatI WGTACW 2 cut(s) 490, 534
Tru1I TTAA 2 cut(s) 270, 363
Tru9I TTAA 2 cut(s) 270, 363
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 3 cut(s) 56, 212, 221
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 4 cut(s) 86, 115, 302, 368
XmiI GTMKAC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.