Rroxscaffold_5G00352840

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000689
Physical Location & Seq
Forward (+)
30248472 .. 30250746
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352840.1

Sequence Viewer

Length: 354 bp
ATGATTACTCTCACTCTGCTAAATATTAGCTGTGAGGTTTTTCATTTGCATGAGTGTAATCTATTGGATGCTGTTATTAGTCTAAAGGTGTATGGATGGGGCCGAGGGGAACATGGTAGACTTGGTTTCGGCGAGAATGATAAGAGCAGTAAAATGGTCCAGCAAAAGGTTCATCTTTTAGCTGGGGAGGATATCGTTCAGGTACCAATTATATTATTTTCCTTGCAAATCCTCTCGATAGCTTTGCTTAGTTGGAACTTAGAATACATGGAAACCTATTTAACCAAAAAGCTAGCACATTTAGTGAAATGTACCAAGACAAAGGTTTTGCTTCTTGTAGGTTTTAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

117

Amino Acids

13.21

Weight (kDa)

7.76

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 118
AfaI GTAC 2 cut(s) 204, 313
AfiI CCNNNNNNNGG 1 cut(s) 166
AluBI AGCT 4 cut(s) 30, 182, 242, 292
AluI AGCT 4 cut(s) 30, 182, 242, 292
AoxI GGCC 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
Asp718I GGTACC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 100, 157
AsuNHI GCTAGC 1 cut(s) 292
AvaII GGWCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 202
BccI CCATC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BfaI CTAG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 100, 157
BmiI GGNNCC 2 cut(s) 101, 204
BmsI GCATC 1 cut(s) 58
BmtI GCTAGC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 73, 101
BseLI CCNNNNNNNGG 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 182
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 1 cut(s) 102
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 101, 204
BspOI GCTAGC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 248, 259
BstF5I GGATG 2 cut(s) 73, 101
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 73, 101
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 100, 157
Csp6I GTAC 2 cut(s) 203, 312
CviAII CATG 3 cut(s) 50, 113, 268
CviJI RGCY 5 cut(s) 30, 102, 182, 242, 292
CviKI_1 RGCY 5 cut(s) 30, 102, 182, 242, 292
CviQI GTAC 2 cut(s) 203, 312
DdeI CTNAG 2 cut(s) 248, 259
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 157
EcoRV GATATC 1 cut(s) 193
FaeI CATG 3 cut(s) 53, 116, 271
FaiI YATR 6 cut(s) 51, 93, 114, 212, 269, 352
FatI CATG 3 cut(s) 49, 112, 267
FblI GTMKAC 1 cut(s) 118
FokI GGATG 2 cut(s) 80, 108
FspBI CTAG 1 cut(s) 293
GsaI CCCAGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 3 cut(s) 53, 116, 271
Hpy166II GTNNAC 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 49, 226
HpyF3I CTNAG 2 cut(s) 248, 259
Hsp92II CATG 3 cut(s) 53, 116, 271
KpnI GGTACC 1 cut(s) 206
LpnPI CCDG 3 cut(s) 168, 173, 185
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 293
MluCI AATT 2 cut(s) 207, 346
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 4 cut(s) 28, 98, 181, 242
MseI TTAA 2 cut(s) 281, 345
MslI CAYNNNNRTG 1 cut(s) 48
NheI GCTAGC 1 cut(s) 292
NlaIII CATG 3 cut(s) 53, 116, 271
NlaIV GGNNCC 2 cut(s) 101, 204
NmeAIII GCCGAG 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 101, 204
PspPI GGNCC 2 cut(s) 100, 157
PsrI GAACNNNNNNTAC 2 cut(s) 248, 280
RsaI GTAC 2 cut(s) 204, 313
RsaNI GTAC 2 cut(s) 203, 312
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 281, 345
Sau96I GGNCC 2 cut(s) 100, 157
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 2 cut(s) 207, 346
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 293
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 207, 346
Tru1I TTAA 2 cut(s) 281, 345
Tru9I TTAA 2 cut(s) 281, 345
TspDTI ATGAA 2 cut(s) 32, 161
VpaK11BI GGWCC 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.