Rmu_sc0000824.1_g000002

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000824.1
OG0000689
Physical Location & Seq
Reverse (-)
1567 .. 3500
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000824.1_g000002.1.cds

Sequence Viewer

Length: 885 bp
atgaggcaaaatgcaaaaacggcacaatgtgaagcactgaaggctgaggtcgacaagtcgtgtactccccggaccgtaaaaacaagcagcaaagcccgacccaaaaggtcgggttctcgggtttccggatcggttcctcggattttcggcctcaaacacccagccctatcattgagtagcatcagtggcggtttccctgcttgggagcctcaaagagcatttcgttggttggagaaattcaaccccacagagttctttgaagatactcttattgaacgagagtacgtagaatgcaccgcatcagcagttcaaggtctagcactctttagaagattgtatcccaaccatcgaagaaaggaaatagacagttgcatatcaagggcaattcgttacattgaagaaacacaaaaccctgatggttcatggtacggatgctggggtatttgctacacatatggtacctggtttggtgtaggagcactagcatcctgtgggaagaagtaccagaatagtcccatattgcgcaaagcctgtgcatttttgctatcaaagcagctacccaatggtggatggggcgagagctacctttccagccaaaataaggtttatacaaatctagaaggcaaccgcgctaatctggtacacactgcatgggctttattgtccctcatcgatgccgggcagggtgatgtagatccaacccccattcatcgtggaataagggttttgatcaattcacaaatggaggatggtgacttccctcaacaggaaattactggagtattcatgagaaattgtacactaaactactcctcatatcgaaatatcttcccgaaatgggctctcggggtgtaccgccgacgcattctgatgcttccatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559 GO:0042299 GO:0042300
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

294

Amino Acids

33.21

Weight (kDa)

9.47

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 524
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 630
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 4 cut(s) 189, 297, 628, 856
AclWI GGATC 2 cut(s) 136, 689
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 8 cut(s) 64, 284, 428, 460, 503, 642, 799, 854
AfiI CCNNNNNNNGG 5 cut(s) 202, 566, 601, 766, 838
AgsI TTSAA 5 cut(s) 241, 260, 275, 311, 398
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 2 cut(s) 556, 582
AluI AGCT 2 cut(s) 556, 582
Alw21I GWGCWC 1 cut(s) 481
AlwI GGATC 2 cut(s) 136, 689
Ama87I CYCGRG 2 cut(s) 117, 845
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 87, 553
ApoI RAATTY 1 cut(s) 236
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 2 cut(s) 525, 632
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 2 cut(s) 70, 679
AsuHPI GGTGA 2 cut(s) 698, 764
AvaI CYCGRG 2 cut(s) 117, 845
AvaII GGWCC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 844
Bbv12I GWGCWC 1 cut(s) 481
BbvCI CCTCAGC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 99, 565
BccI CCATC 4 cut(s) 354, 410, 564, 743
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 463
BciVI GTATCC 1 cut(s) 348
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 2 cut(s) 70, 679
BfaI CTAG 3 cut(s) 317, 482, 617
BfuI GTATCC 1 cut(s) 348
BisI GCNGC 2 cut(s) 88, 554
BlsI GCNGC 2 cut(s) 89, 555
Bme1390I CCNGG 3 cut(s) 70, 463, 679
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 2 cut(s) 117, 845
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 3 cut(s) 135, 207, 460
BmrFI CCNGG 3 cut(s) 70, 463, 679
BmsI GCATC 6 cut(s) 189, 308, 422, 494, 664, 861
BpmI CTGGAG 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 70, 679
Bsa29I ATCGAT 1 cut(s) 672
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 68, 137
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 566, 601, 766, 838
Bse1I ACTGG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 1 cut(s) 463
BseCI ATCGAT 1 cut(s) 672
BseDI CCNNGG 2 cut(s) 68, 137
BseGI GGATG 4 cut(s) 437, 485, 575, 754
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 5 cut(s) 202, 566, 601, 766, 838
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 781
BseRI GAGGAG 1 cut(s) 802
BseXI GCAGC 2 cut(s) 99, 565
BseYI CCCAGC 2 cut(s) 160, 435
Bsh1236I CGCG 1 cut(s) 630
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 458
BshVI ATCGAT 1 cut(s) 672
BsiHKAI GWGCWC 1 cut(s) 481
BsiHKCI CYCGRG 2 cut(s) 117, 845
BsiSI CCGG 3 cut(s) 70, 126, 678
BslFI GGGAC 2 cut(s) 498, 649
BslI CCNNNNNNNGG 5 cut(s) 202, 566, 601, 766, 838
BsmFI GGGAC 2 cut(s) 498, 649
BsmI GAATGC 2 cut(s) 296, 864
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 2 cut(s) 117, 845
Bsp1286I GDGCHC 2 cut(s) 481, 844
Bsp13I TCCGGA 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 797
Bsp143I GATC 3 cut(s) 128, 694, 729
BspACI CCGC 4 cut(s) 189, 297, 628, 856
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 37
BspDI ATCGAT 1 cut(s) 672
BspEI TCCGGA 1 cut(s) 125
BspFNI CGCG 1 cut(s) 630
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 3 cut(s) 135, 207, 460
BspPI GGATC 2 cut(s) 136, 689
BspT107I GGYRCC 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 797
BsrI ACTGG 1 cut(s) 781
BssECI CCNNGG 2 cut(s) 68, 137
BssMI GATC 3 cut(s) 128, 694, 729
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 2 cut(s) 76, 368
BstAUI TGTACA 1 cut(s) 797
BstBAI YACGTR 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 4 cut(s) 437, 485, 575, 754
BstFNI CGCG 1 cut(s) 630
BstHHI GCGC 2 cut(s) 525, 632
BstKTI GATC 3 cut(s) 131, 697, 732
BstMBI GATC 3 cut(s) 128, 694, 729
BstMWI GCNNNNNNNGC 4 cut(s) 20, 41, 186, 550
BstNI CCWGG 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 68, 461, 677
BstSNI TACGTA 1 cut(s) 286
BstUI CGCG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 99, 565
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
Bsu15I ATCGAT 1 cut(s) 672
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 150
BsuTUI ATCGAT 1 cut(s) 672
BtsCI GGATG 4 cut(s) 437, 485, 575, 754
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 3 cut(s) 35, 190, 645
CciI TCATGA 1 cut(s) 786
CfoI GCGC 2 cut(s) 525, 632
Cfr13I GGNCC 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 672
CpoI CGGWCCG 1 cut(s) 72
CseI GACGC 1 cut(s) 870
CsiI ACCWGGT 1 cut(s) 461
Csp6I GTAC 8 cut(s) 63, 283, 427, 459, 502, 641, 798, 853
CspI CGGWCCG 1 cut(s) 72
CviAII CATG 3 cut(s) 423, 651, 787
CviQI GTAC 8 cut(s) 63, 283, 427, 459, 502, 641, 798, 853
DdeI CTNAG 1 cut(s) 45
DpnI GATC 3 cut(s) 130, 696, 731
DpnII GATC 3 cut(s) 128, 694, 729
DraIII CACNNNGTG 1 cut(s) 29
Eco105I TACGTA 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 844
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 2 cut(s) 117, 845
EcoRII CCWGG 1 cut(s) 461
EcoT38I GRGCYC 1 cut(s) 844
FaeI CATG 3 cut(s) 426, 654, 790
FaiI YATR 9 cut(s) 374, 424, 454, 456, 518, 609, 652, 788, 817
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 2 cut(s) 498, 649
FatI CATG 3 cut(s) 422, 650, 786
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 88, 554
FokI GGATG 4 cut(s) 444, 472, 582, 761
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 2 cut(s) 88, 554
FspBI CTAG 3 cut(s) 317, 482, 617
FspI TGCGCA 1 cut(s) 524
GlaI GCGC 2 cut(s) 524, 631
GluI GCNGC 2 cut(s) 88, 554
GsaI CCCAGC 2 cut(s) 164, 439
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 1 cut(s) 150
HapII CCGG 3 cut(s) 70, 126, 678
HgaI GACGC 1 cut(s) 870
HhaI GCGC 2 cut(s) 525, 632
Hin1II CATG 3 cut(s) 426, 654, 790
Hin6I GCGC 2 cut(s) 523, 630
HinP1I GCGC 2 cut(s) 523, 630
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HpaII CCGG 3 cut(s) 70, 126, 678
HphI GGTGA 2 cut(s) 698, 764
Hpy166II GTNNAC 5 cut(s) 52, 63, 643, 800, 853
Hpy188I TCNGA 2 cut(s) 141, 870
Hpy188III TCNNGA 5 cut(s) 126, 617, 787, 832, 882
Hpy8I GTNNAC 5 cut(s) 52, 63, 643, 800, 853
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 2 cut(s) 34, 614
HpyCH4III ACNGT 2 cut(s) 76, 368
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 5 cut(s) 14, 294, 372, 536, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 41, 186, 550
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 3 cut(s) 426, 654, 790
HspAI GCGC 2 cut(s) 523, 630
Kpn2I TCCGGA 1 cut(s) 125
KpnI GGTACC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 3 cut(s) 128, 694, 729
LmnI GCTCC 2 cut(s) 205, 476
Lsp1109I GCAGC 2 cut(s) 99, 565
LweI GCATC 6 cut(s) 189, 308, 422, 494, 664, 861
MabI ACCWGGT 1 cut(s) 461
MaeI CTAG 3 cut(s) 317, 482, 617
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 389, 752
MalI GATC 3 cut(s) 130, 696, 731
MboI GATC 3 cut(s) 128, 694, 729
MboII GAAGA 6 cut(s) 272, 342, 363, 410, 508, 820
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 2 cut(s) 481, 844
MluCI AATT 5 cut(s) 236, 384, 733, 771, 793
MmeI TCCRAC 2 cut(s) 210, 722
MnlI CCTC 8 cut(s) 40, 147, 161, 219, 677, 739, 771, 823
MroI TCCGGA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 869
MspI CCGG 3 cut(s) 70, 126, 678
MspR9I CCNGG 3 cut(s) 70, 463, 679
Mva1269I GAATGC 2 cut(s) 296, 864
MvaI CCWGG 1 cut(s) 463
MvnI CGCG 1 cut(s) 630
MwoI GCNNNNNNNGC 4 cut(s) 20, 41, 186, 550
NciI CCSGG 2 cut(s) 70, 679
NdeI CATATG 1 cut(s) 454
NdeII GATC 3 cut(s) 128, 694, 729
NlaIII CATG 3 cut(s) 426, 654, 790
NlaIV GGNNCC 3 cut(s) 135, 207, 460
NmuCI GTSAC 1 cut(s) 752
NsbI TGCGCA 1 cut(s) 524
PagI TCATGA 1 cut(s) 786
PctI GAATGC 2 cut(s) 296, 864
PkrI GCNGC 2 cut(s) 89, 555
Ppu21I YACGTR 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 461
PspFI CCCAGC 2 cut(s) 160, 435
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 3 cut(s) 135, 207, 460
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 8 cut(s) 64, 284, 428, 460, 503, 642, 799, 854
RsaNI GTAC 8 cut(s) 63, 283, 427, 459, 502, 641, 798, 853
RseI CAYNNNNRTG 1 cut(s) 869
Rsr2I CGGWCCG 1 cut(s) 72
RsrII CGGWCCG 1 cut(s) 72
SalI GTCGAC 1 cut(s) 50
SatI GCNGC 2 cut(s) 88, 554
Sau3AI GATC 3 cut(s) 128, 694, 729
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 3 cut(s) 70, 463, 679
SduI GDGCHC 2 cut(s) 481, 844
SetI ASST 9 cut(s) 51, 110, 288, 316, 464, 558, 584, 588, 606
SexAI ACCWGGT 1 cut(s) 461
SfaNI GCATC 6 cut(s) 189, 308, 422, 494, 664, 861
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 869
SnaBI TACGTA 1 cut(s) 286
Sse9I AATT 5 cut(s) 236, 384, 733, 771, 793
SsiI CCGC 4 cut(s) 189, 297, 628, 856
SspMI CTAG 3 cut(s) 317, 482, 617
StyD4I CCNGG 3 cut(s) 68, 461, 677
TaaI ACNGT 2 cut(s) 76, 368
TaiI ACGT 1 cut(s) 288
TaqI TCGA 4 cut(s) 51, 349, 672, 820
TasI AATT 5 cut(s) 236, 384, 733, 771, 793
TatI WGTACW 2 cut(s) 62, 797
TscAI CASTG 3 cut(s) 42, 190, 652
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 2 cut(s) 87, 553
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 3 cut(s) 411, 698, 775
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 3 cut(s) 42, 190, 652
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 236
XbaI TCTAGA 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 3 cut(s) 317, 482, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.