Rroxscaffold_5G00361500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000689
Physical Location & Seq
Reverse (-)
42205159 .. 42208660
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361500.1

Sequence Viewer

Length: 288 bp
ATGCGTGTGGCGTGGGAGCTAGAAAAGCATGAGTTTGAGAAGAAGAGGTTCGGCGATGATGATCGGAGCGTCGAGGAGCGAGAGCGGGTTCGTTTCGATCTTCCCGGCGAGGCTTGGTCGAGGTTCGGGAGTCCGAGGCACCGATCGACGTTGGTTTATTGGGATCGGGTTTTCCCGATTTCGGTGGGGTTGTTCTTGGTTCGGAAGGAAGGCGGCGGACCCGGTGCGGTGATGCGGTCTTTGGAGGGCGGCCGCCGGGAGAGCTTGGTGGCAACGACGATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.05

Weight (kDa)

8.18

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 85
AciI CCGC 7 cut(s) 85, 213, 216, 227, 235, 249, 253
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 181
AluBI AGCT 2 cut(s) 19, 264
AluI AGCT 2 cut(s) 19, 264
AlwI GGATC 1 cut(s) 171
AoxI GGCC 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 3 cut(s) 105, 222, 257
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 138
BccI CCATC 1 cut(s) 274
BcnI CCSGG 3 cut(s) 105, 222, 257
BfaI CTAG 1 cut(s) 20
BisI GCNGC 3 cut(s) 214, 250, 253
BlsI GCNGC 3 cut(s) 215, 251, 254
Bme1390I CCNGG 3 cut(s) 105, 222, 257
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 140, 220
BmrFI CCNGG 3 cut(s) 105, 222, 257
BmsI GCATC 1 cut(s) 222
BpuMI CCSGG 3 cut(s) 105, 222, 257
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 134
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 250
Bsh1285I CGRYCG 2 cut(s) 146, 253
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 138
BsiEI CGRYCG 2 cut(s) 146, 253
BsiSI CCGG 3 cut(s) 105, 222, 256
BslI CCNNNNNNNGG 1 cut(s) 181
BsnI GGCC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 61, 97, 143, 163
BspACI CCGC 7 cut(s) 85, 213, 216, 227, 235, 249, 253
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 140, 220
BspPI GGATC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 4 cut(s) 61, 97, 143, 163
Bst6I CTCTTC 1 cut(s) 38
BstKTI GATC 4 cut(s) 64, 100, 146, 166
BstMBI GATC 4 cut(s) 61, 97, 143, 163
BstMCI CGRYCG 2 cut(s) 146, 253
BstMWI GCNNNNNNNGC 2 cut(s) 25, 261
BstSCI CCNGG 3 cut(s) 103, 220, 255
BstZI CGGCCG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 69
CciNI GCGGCCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 58
CviAII CATG 1 cut(s) 29
CviJI RGCY 4 cut(s) 19, 113, 252, 264
CviKI_1 RGCY 4 cut(s) 19, 113, 252, 264
DpnI GATC 4 cut(s) 63, 99, 145, 165
DpnII GATC 4 cut(s) 61, 97, 143, 163
EaeI YGGCCR 1 cut(s) 250
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 231
EclXI CGGCCG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 250
FaeI CATG 1 cut(s) 32
FaiI YATR 1 cut(s) 30
FatI CATG 1 cut(s) 28
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 214, 250, 253
Fsp4HI GCNGC 3 cut(s) 214, 250, 253
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 214, 250, 253
HaeIII GGCC 1 cut(s) 252
HapII CCGG 3 cut(s) 105, 222, 256
HgaI GACGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 32
HinfI GANTC 1 cut(s) 130
HpaII CCGG 3 cut(s) 105, 222, 256
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 66, 135, 204
Hpy188III TCNNGA 2 cut(s) 127, 175
Hpy99I CGWCG 3 cut(s) 74, 151, 280
HpyAV CCTTC 2 cut(s) 199, 203
HpyCH4IV ACGT 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 261
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 4 cut(s) 61, 97, 143, 163
LmnI GCTCC 3 cut(s) 16, 66, 76
LpnPI CCDG 3 cut(s) 118, 235, 269
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 149
MalI GATC 4 cut(s) 63, 99, 145, 165
MbiI CCGCTC 1 cut(s) 85
MboI GATC 4 cut(s) 61, 97, 143, 163
MboII GAAGA 3 cut(s) 52, 55, 92
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 6 cut(s) 39, 67, 103, 114, 129, 238
MroXI GAANNNNTTC 1 cut(s) 47
MspI CCGG 3 cut(s) 105, 222, 256
MspR9I CCNGG 3 cut(s) 105, 222, 257
MwoI GCNNNNNNNGC 2 cut(s) 25, 261
NciI CCSGG 3 cut(s) 105, 222, 257
NdeII GATC 4 cut(s) 61, 97, 143, 163
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 2 cut(s) 140, 220
NotI GCGGCCGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 215, 251, 254
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 140, 220
PspPI GGNCC 1 cut(s) 218
PvuI CGATCG 1 cut(s) 146
SatI GCNGC 3 cut(s) 214, 250, 253
Sau3AI GATC 4 cut(s) 61, 97, 143, 163
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 105, 222, 257
SetI ASST 5 cut(s) 21, 50, 125, 152, 266
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 1 cut(s) 218
SsiI CCGC 7 cut(s) 85, 213, 216, 227, 235, 249, 253
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 103, 220, 255
TaiI ACGT 1 cut(s) 152
TaqI TCGA 4 cut(s) 72, 96, 119, 146
TauI GCSGC 3 cut(s) 216, 252, 255
VpaK11BI GGWCC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.