pycom16g19890

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
17345970 .. 17347595
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g19890.1

Sequence Viewer

Length: 423 bp
ATGTGGTGTCACTGTAGGATGGTTTATCTGCCCATGTCATATTTATACGGAAAGAGATTTGTAGGTCCTATCGACGGCCTTATTTTATCTCTCAGGAGAGAACTTTATACCTTTTCCTATCACCTGATTGATTGGGATCAAGCAAGAAATCTATGTGCTGAGGAGGATTTGTATTACCCACATCCCCTTTTACAGGACATGTTGTGGGGATCTCTTCATAAGGTTGGGGAGCCTCTTCTGAAGGGATGGCCCTTCTCTAAACTAAGGCAAAAGGCTCTCCGCACTATAATGCAACACATACACTATGAGGATGAAAATACTCAATATATTTGCATTGGACCTGTCAATAAGGTTTGTTTAAAAATATTAAATAAAAAGGAGAATACAACTGTACACAATAAATATTTGATATTATTTATATAA
Functional Annotation

Protein Analysis

141

Amino Acids

16.75

Weight (kDa)

8.78

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 280
AclWI GGATC 2 cut(s) 144, 217
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 2 cut(s) 74, 193
AflIII ACRYGT 1 cut(s) 198
AlwI GGATC 2 cut(s) 144, 217
AoxI GGCC 2 cut(s) 76, 248
AspS9I GGNCC 3 cut(s) 65, 249, 338
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 2 cut(s) 65, 338
BbvCI CCTCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 13, 240
BceAI ACGGC 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 13
Bme18I GGWCC 2 cut(s) 65, 338
BmgT120I GGNCC 3 cut(s) 65, 249, 338
BmiI GGNNCC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 193
Bse8I GATNNNNATC 1 cut(s) 135
BseGI GGATG 4 cut(s) 24, 181, 251, 316
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 74, 193
BseMII CTCAG 2 cut(s) 106, 150
BseRI GAGGAG 1 cut(s) 176
BshFI GGCC 2 cut(s) 78, 250
BslI CCNNNNNNNGG 2 cut(s) 74, 193
BsnI GGCC 2 cut(s) 78, 250
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 136, 209
BspACI CCGC 1 cut(s) 280
BspANI GGCC 2 cut(s) 78, 250
BspCNI CTCAG 2 cut(s) 105, 151
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 144, 217
BsrGI TGTACA 1 cut(s) 391
BssMI GATC 2 cut(s) 136, 209
Bst4CI ACNGT 2 cut(s) 14, 391
Bst6I CTCTTC 2 cut(s) 219, 240
BstAUI TGTACA 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 92, 159, 263
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 4 cut(s) 24, 181, 251, 316
BstKTI GATC 2 cut(s) 139, 212
BstMBI GATC 2 cut(s) 136, 209
BstNSI RCATGY 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 2 cut(s) 78, 250
BtsCI GGATG 4 cut(s) 24, 181, 251, 316
BtsIMutI CAGTG 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 65, 249, 338
Csp6I GTAC 1 cut(s) 392
CviAII CATG 2 cut(s) 34, 199
CviJI RGCY 4 cut(s) 78, 232, 250, 275
CviKI_1 RGCY 4 cut(s) 78, 232, 250, 275
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 3 cut(s) 92, 159, 263
DpnI GATC 2 cut(s) 138, 211
DpnII GATC 2 cut(s) 136, 209
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 219, 240
EarI CTCTTC 2 cut(s) 219, 240
Eco47I GGWCC 2 cut(s) 65, 338
Eco57I CTGAAG 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 65
FaeI CATG 2 cut(s) 37, 202
FatI CATG 2 cut(s) 33, 198
FokI GGATG 4 cut(s) 31, 168, 258, 323
HaeIII GGCC 2 cut(s) 78, 250
Hin1II CATG 2 cut(s) 37, 202
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 235, 262
HpyCH4III ACNGT 2 cut(s) 14, 391
HpyCH4V TGCA 2 cut(s) 292, 333
HpyF3I CTNAG 3 cut(s) 92, 159, 263
Hsp92II CATG 2 cut(s) 37, 202
Kzo9I GATC 2 cut(s) 136, 209
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 79, 137, 179, 354
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 138, 211
MboI GATC 2 cut(s) 136, 209
MboII GAAGA 2 cut(s) 206, 227
MflI RGATCY 1 cut(s) 209
MnlI CCTC 4 cut(s) 154, 157, 243, 301
MseI TTAA 2 cut(s) 359, 368
MslI CAYNNNNRTG 1 cut(s) 287
NdeII GATC 2 cut(s) 136, 209
NlaIII CATG 2 cut(s) 37, 202
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 1 cut(s) 202
PciI ACATGT 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 65
PscI ACATGT 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 3 cut(s) 65, 249, 338
PspPPI RGGWCCY 1 cut(s) 65
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 359, 368
Sau3AI GATC 2 cut(s) 136, 209
Sau96I GGNCC 3 cut(s) 65, 249, 338
SetI ASST 6 cut(s) 67, 113, 126, 225, 343, 354
SfcI CTRYAG 1 cut(s) 13
SgeI CNNG 8 cut(s) 46, 106, 136, 152, 156, 206, 211, 353
SinI GGWCC 2 cut(s) 65, 338
SmiMI CAYNNNNRTG 1 cut(s) 287
SsiI CCGC 1 cut(s) 280
SspI AATATT 2 cut(s) 366, 404
TaaI ACNGT 2 cut(s) 14, 391
TaqI TCGA 1 cut(s) 72
TatI WGTACW 1 cut(s) 391
Tru1I TTAA 2 cut(s) 359, 368
Tru9I TTAA 2 cut(s) 359, 368
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 206, 327
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 65, 338
XagI CCTNNNNNAGG 1 cut(s) 191
XceI RCATGY 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.