Rroxscaffold_7G00198120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000689
Physical Location & Seq
Reverse (-)
43057137 .. 43060835
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198120.1

Sequence Viewer

Length: 237 bp
ATGGAAAGGAGTTCTTTCGTCAAGCCAGAAGCAGACCAACTATCCATTGCTAAATCTGAGTCCACTGCTAAATCCAAGTCTACAAGCACGAGTAGGAGGAGGAAAAGAGAGGATGATGATAACATAGTTCGTGGCTTACACAAGTTTGCTGCAACATTCAAAGAAAGGCTTGGCAAGATGCGTGTGGCGTGGGAGCTAGAAAAGCATGTGTTTGAGAAGAAGAGGTTCCAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.21

Weight (kDa)

10.38

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 80
AciI CCGC 1 cut(s) 232
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 224
BauI CACGAG 1 cut(s) 88
BbvI GCAGC 1 cut(s) 136
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 227
BmsI GCATC 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 45
BseGI GGATG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 136
BspACI CCGC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 45
BssSI CACGAG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
CviAII CATG 1 cut(s) 206
CviJI RGCY 4 cut(s) 25, 135, 169, 196
CviKI_1 RGCY 4 cut(s) 25, 135, 169, 196
DdeI CTNAG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 125, 207
FalI AAGNNNNNCTT 3 cut(s) 30, 153, 185
FatI CATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 209
HinfI GANTC 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 63, 81
Hpy188I TCNGA 1 cut(s) 58
Hpy8I GTNNAC 2 cut(s) 63, 81
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 1 cut(s) 209
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 197
MboII GAAGA 2 cut(s) 229, 232
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 90, 93, 103, 216
MroXI GAANNNNTTC 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 202
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 227
NspI RCATGY 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 227
SatI GCNGC 1 cut(s) 150
SchI GAGTC 1 cut(s) 68
SetI ASST 2 cut(s) 198, 227
SfaNI GCATC 1 cut(s) 168
SsiI CCGC 1 cut(s) 232
SspMI CTAG 1 cut(s) 197
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 149
TspRI CASTG 1 cut(s) 70
XceI RCATGY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.