Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008678.1

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

254 .. 4273

Gene Structure 4020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008678.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgtatggaaattggggagtttgcttcatatatggtacctggtttgcgctaggaggattggcagctgctggcaagaccttcagaactagtgaggccatgcgcaatggggttagttttctacttacagcgcagagagagaacggcggttggggagagagctatcgttcatgtccacaaaagcgcctgcaagccctgcttgccttctgccctcacgcacactcgcctgccctcgcgacagtgactcaccagctacaccgcgaccctgggagcccagtgtcaccgcaactcgcccgcgacctcgtggcattcctgcagcatcctcacggcatccctgcagcaccctcgtggcatccccgctactccgcacccccgcgacaccgaacccacgcccgcgacgctcccgcaaactcttctgtgataagcttgcgaccccgagaacaaatcagggacaaatcagggagcataattacctttctaatttatggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

162

Amino Acids

17.82

Weight (kDa)

10.21

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	101
Acc65I	GGTACC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	35
AccII	CGCG	5 cut(s)	233, 258, 294, 373, 393
AciI	CCGC	9 cut(s)	144, 256, 281, 292, 355, 363, 371, 391, 402
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	38, 262
AleI	CACNNNNGTG	1 cut(s)	343
AluBI	AGCT	4 cut(s)	65, 159, 250, 423
AluI	AGCT	4 cut(s)	65, 159, 250, 423
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	4 cut(s)	62, 65, 313, 335
Asp718I	GGTACC	1 cut(s)	35
AspLEI	GCGC	4 cut(s)	49, 102, 130, 183
AsuHPI	GGTGA	2 cut(s)	236, 270
AvaI	CYCGRG	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	272
BauI	CACGAG	2 cut(s)	299, 343
BbvI	GCAGC	4 cut(s)	52, 74, 325, 347
BceAI	ACGGC	2 cut(s)	157, 340
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	2 cut(s)	40, 264
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	3 cut(s)	50, 87, 487
BfmI	CTRYAG	2 cut(s)	311, 333
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	4 cut(s)	63, 66, 314, 336
BlsI	GCNGC	4 cut(s)	64, 67, 315, 337
Bme1390I	CCNGG	2 cut(s)	40, 264
BmeT110I	CYCGRG	1 cut(s)	432
BmiI	GGNNCC	2 cut(s)	37, 269
BmrFI	CCNGG	2 cut(s)	40, 264
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	3 cut(s)	325, 336, 358
BmuI	ACTGGG	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	262, 263
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	40, 264
BseDI	CCNNGG	2 cut(s)	262, 263
BseGI	GGATG	3 cut(s)	316, 327, 349
BseMI	GCAATG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	4 cut(s)	52, 74, 325, 347
Bsh1236I	CGCG	5 cut(s)	233, 258, 294, 373, 393
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp68I	TCGCGA	1 cut(s)	233
BspACI	CCGC	9 cut(s)	144, 256, 281, 292, 355, 363, 371, 391, 402
BspANI	GGCC	1 cut(s)	95
BspFNI	CGCG	5 cut(s)	233, 258, 294, 373, 393
BspLI	GGNNCC	2 cut(s)	37, 269
BspMAI	CTGCAG	2 cut(s)	315, 337
BspT107I	GGYRCC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	262, 263
BssSI	CACGAG	2 cut(s)	299, 343
Bst2BI	CACGAG	2 cut(s)	299, 343
Bst2UI	CCWGG	2 cut(s)	40, 264
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstC8I	GCNNGC	8 cut(s)	70, 185, 189, 198, 225, 292, 391, 425
BstF5I	GGATG	3 cut(s)	316, 327, 349
BstFNI	CGCG	5 cut(s)	233, 258, 294, 373, 393
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	4 cut(s)	49, 102, 130, 183
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 197, 395
BstNI	CCWGG	2 cut(s)	40, 264
BstSCI	CCNGG	2 cut(s)	38, 262
BstSFI	CTRYAG	2 cut(s)	311, 333
BstUI	CGCG	5 cut(s)	233, 258, 294, 373, 393
BstV1I	GCAGC	4 cut(s)	52, 74, 325, 347
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	3 cut(s)	316, 327, 349
BtsIMutI	CAGTG	2 cut(s)	243, 279
BtuMI	TCGCGA	1 cut(s)	233
Cac8I	GCNNGC	8 cut(s)	70, 185, 189, 198, 225, 292, 391, 425
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	4 cut(s)	49, 102, 130, 183
CseI	GACGC	1 cut(s)	404
CsiI	ACCWGGT	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	97, 168
CviJI	RGCY	8 cut(s)	65, 95, 159, 191, 250, 270, 423, 486
CviKI_1	RGCY	8 cut(s)	65, 95, 159, 191, 250, 270, 423, 486
CviQI	GTAC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	38, 262
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	2 cut(s)	100, 171
FaiI	YATR	8 cut(s)	6, 29, 31, 33, 98, 169, 464, 483
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	96, 167
FauI	CCCGC	5 cut(s)	299, 362, 378, 398, 409
Fnu4HI	GCNGC	4 cut(s)	63, 66, 314, 336
FokI	GGATG	3 cut(s)	303, 314, 336
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	4 cut(s)	63, 66, 314, 336
FspBI	CTAG	3 cut(s)	50, 87, 487
FspI	TGCGCA	1 cut(s)	101
GlaI	GCGC	4 cut(s)	48, 101, 129, 182
GluI	GCNGC	4 cut(s)	63, 66, 314, 336
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	95
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	4 cut(s)	49, 102, 130, 183
Hin1II	CATG	2 cut(s)	100, 171
Hin6I	GCGC	4 cut(s)	47, 100, 128, 181
HinP1I	GCGC	4 cut(s)	47, 100, 128, 181
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	2 cut(s)	236, 270
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	2 cut(s)	88, 211
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	187, 313, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 197, 395
Hsp92II	CATG	2 cut(s)	100, 171
HspAI	GCGC	4 cut(s)	47, 100, 128, 181
KpnI	GGTACC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	267, 403, 459
Lsp1109I	GCAGC	4 cut(s)	52, 74, 325, 347
LweI	GCATC	3 cut(s)	325, 336, 358
MabI	ACCWGGT	1 cut(s)	38
MaeI	CTAG	3 cut(s)	50, 87, 487
MaeIII	GTNAC	2 cut(s)	238, 276
MboII	GAAGA	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	3 cut(s)	10, 465, 477
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	7 cut(s)	47, 85, 219, 239, 308, 330, 352
MslI	CAYNNNNRTG	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	40, 264
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	2 cut(s)	40, 264
MvnI	CGCG	5 cut(s)	233, 258, 294, 373, 393
MwoI	GCNNNNNNNGC	3 cut(s)	193, 197, 395
NlaIII	CATG	2 cut(s)	100, 171
NlaIV	GGNNCC	2 cut(s)	37, 269
NmuCI	GTSAC	2 cut(s)	238, 276
NruI	TCGCGA	1 cut(s)	233
NsbI	TGCGCA	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	343
PasI	CCCWGGG	1 cut(s)	263
PctI	GAATGC	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	64, 67, 315, 337
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	38, 262
PspGI	CCWGG	2 cut(s)	38, 262
PspN4I	GGNNCC	2 cut(s)	37, 269
PstI	CTGCAG	2 cut(s)	315, 337
PstNI	CAGNNNCTG	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	65
RruI	TCGCGA	1 cut(s)	233
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	343
SatI	GCNGC	4 cut(s)	63, 66, 314, 336
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	40, 264
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	8 cut(s)	41, 67, 80, 161, 252, 300, 425, 473
SexAI	ACCWGGT	1 cut(s)	38
SfaNI	GCATC	3 cut(s)	325, 336, 358
SfcI	CTRYAG	2 cut(s)	311, 333
SmiMI	CAYNNNNRTG	1 cut(s)	343
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	3 cut(s)	10, 465, 477
SsiI	CCGC	9 cut(s)	144, 256, 281, 292, 355, 363, 371, 391, 402
SspMI	CTAG	3 cut(s)	50, 87, 487
StyD4I	CCNGG	2 cut(s)	38, 262
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	3 cut(s)	10, 465, 477
TscAI	CASTG	2 cut(s)	243, 279
TseFI	GTSAC	2 cut(s)	238, 276
TseI	GCWGC	4 cut(s)	62, 65, 313, 335
Tsp45I	GTSAC	2 cut(s)	238, 276
TspDTI	ATGAA	2 cut(s)	16, 156
TspRI	CASTG	2 cut(s)	243, 279
XspI	CTAG	3 cut(s)	50, 87, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.