RLG00000026543

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
3714008 .. 3717448
3441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026543

Sequence Viewer

Length: 375 bp
ATGAATGAGTTTTGTGTATGTGCCTTAATGAGTATTGGTTGTGTGATTGGAACAGATACTTTTGCCCTTATCCCTGTCCAGAGGAGAATTTGGTTTCATTCGCTGTCAAAACATTTAGTTCCTCCAATTCAGAATTCAGAGAAAGCTGATTTCACAAACCTTATATTTTCCAAACATTGTAAATGTTCCTCTCTTCAAGGGATGCTCAATGGAATTCATCAATCAGATTACCCTGAAGACCAGATCTGCCTATCCGGAGTCCAGAAGCGCATACATTATGTTTTTCACAATCTCAGACTCACTGATCTCAATCAATCTCCATCAAGACTTGGTCGAAAAGAGGAAATCTATTGTTCTCACTCAAAAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.18

Weight (kDa)

8.73

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 254
AcsI RAATTY 3 cut(s) 87, 133, 213
AcuI CTGAAG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 118, 150
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 254
ApoI RAATTY 3 cut(s) 87, 133, 213
AspLEI GCGC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 243
BccI CCATC 1 cut(s) 328
BglII AGATCT 1 cut(s) 243
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 254
BseGI GGATG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 309
BseMII CTCAG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 254
Bsp143I GATC 2 cut(s) 243, 304
BspCNI CTCAG 1 cut(s) 306
BspEI TCCGGA 1 cut(s) 254
BssMI GATC 2 cut(s) 243, 304
Bst6I CTCTTC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 246, 307
BstMBI GATC 2 cut(s) 243, 304
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 300
CfoI GCGC 1 cut(s) 270
CviJI RGCY 1 cut(s) 146
CviKI_1 RGCY 1 cut(s) 146
DdeI CTNAG 1 cut(s) 293
DpnI GATC 2 cut(s) 245, 306
DpnII GATC 2 cut(s) 243, 304
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 255
EcoRI GAATTC 2 cut(s) 133, 213
FaiI YATR 4 cut(s) 19, 164, 272, 279
FokI GGATG 1 cut(s) 214
GlaI GCGC 1 cut(s) 269
HapII CCGG 1 cut(s) 255
HhaI GCGC 1 cut(s) 270
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 2 cut(s) 258, 297
HpaII CCGG 1 cut(s) 255
Hpy188I TCNGA 4 cut(s) 132, 139, 226, 296
Hpy188III TCNNGA 4 cut(s) 79, 255, 262, 324
HpyF3I CTNAG 1 cut(s) 293
HspAI GCGC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 254
Kzo9I GATC 2 cut(s) 243, 304
LpnPI CCDG 6 cut(s) 87, 92, 246, 254, 268, 275
LweI GCATC 1 cut(s) 192
MalI GATC 2 cut(s) 245, 306
MboI GATC 2 cut(s) 243, 304
MboII GAAGA 2 cut(s) 185, 248
MflI RGATCY 1 cut(s) 243
MluCI AATT 4 cut(s) 87, 126, 133, 213
MlyI GAGTC 2 cut(s) 267, 291
MnlI CCTC 4 cut(s) 75, 132, 199, 334
MroI TCCGGA 1 cut(s) 254
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 255
NdeII GATC 2 cut(s) 243, 304
PflFI GACNNNGTC 1 cut(s) 330
PleI GAGTC 2 cut(s) 266, 291
PpsI GAGTC 2 cut(s) 266, 291
PsuI RGATCY 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 2 cut(s) 243, 304
SchI GAGTC 2 cut(s) 267, 291
SetI ASST 2 cut(s) 148, 162
SfaNI GCATC 1 cut(s) 192
SgeI CNNG 9 cut(s) 86, 91, 209, 245, 253, 267, 274, 336, 341
Sse9I AATT 4 cut(s) 87, 126, 133, 213
TaqI TCGA 1 cut(s) 334
TasI AATT 4 cut(s) 87, 126, 133, 213
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 17, 86, 206
TspRI CASTG 1 cut(s) 307
Tth111I GACNNNGTC 1 cut(s) 330
XapI RAATTY 3 cut(s) 87, 133, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.