Rroxscaffold_5G00354640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000689
Physical Location & Seq
Forward (+)
33118135 .. 33120452
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354640.1

Sequence Viewer

Length: 315 bp
ATGGACCGCGGTGAGCGACCGGAGATGGGCTGCATTGGGCCGGGACCGGTCGGAGATGGGCTGCGGGTGAGCGACCGGAGAAGAGGACCTAGAGAAGATGAAGGCGTTCCGGTCGGAATCGTGCCGAATCGGGCTGGAGAAGCATGGGTGTCCACGGGGAACTTTGGTGAAGATGAGAGGGTGAATAGTAATGAAAACAAGGAACTGGAGACTTTGTTAATGGGAATGAAAAAACTCAAGCAGCTTCTTAAAAGAAGTCTAATTTCTTTGAACCCTGATCTATTGGATTCTATCAAATGGAACCACAGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

6.59

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 7, 9, 64
AfiI CCNNNNNNNGG 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 271
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 203
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 3 cut(s) 30, 61, 241
AsiGI ACCGGT 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 4 cut(s) 4, 38, 44, 86
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 4 cut(s) 23, 79, 179, 193
AvaII GGWCC 3 cut(s) 4, 44, 86
BbvI GCAGC 3 cut(s) 17, 48, 253
BccI CCATC 2 cut(s) 19, 50
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 90
BisI GCNGC 3 cut(s) 31, 62, 242
BlsI GCNGC 3 cut(s) 32, 63, 243
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 3 cut(s) 4, 44, 86
BmgT120I GGNCC 4 cut(s) 4, 38, 44, 86
BmiI GGNNCC 2 cut(s) 45, 302
BmrFI CCNGG 1 cut(s) 42
BpmI CTGGAG 2 cut(s) 156, 227
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 7, 153
BsaWI WCCGGW 4 cut(s) 19, 46, 75, 109
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 7, 153
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 3 cut(s) 17, 48, 253
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 4 cut(s) 20, 51, 76, 114
BshFI GGCC 1 cut(s) 40
BshTI ACCGGT 1 cut(s) 46
BsiEI CGRYCG 4 cut(s) 20, 51, 76, 114
BsiSI CCGG 5 cut(s) 20, 41, 47, 76, 110
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 3 cut(s) 7, 9, 64
BspANI GGCC 1 cut(s) 40
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 45, 302
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 7, 153
BssMI GATC 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 76
BstDSI CCRYGG 2 cut(s) 7, 153
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 277
BstMCI CGRYCG 4 cut(s) 20, 51, 76, 114
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 40
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 17, 48, 253
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 2 cut(s) 7, 153
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 4 cut(s) 4, 38, 44, 86
Cfr42I CCGCGG 1 cut(s) 10
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 1 cut(s) 144
CviJI RGCY 5 cut(s) 30, 40, 61, 134, 244
CviKI_1 RGCY 5 cut(s) 30, 40, 61, 134, 244
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco47I GGWCC 3 cut(s) 4, 44, 86
EcoO109I RGGNCCY 1 cut(s) 86
FaeI CATG 1 cut(s) 147
FaiI YATR 1 cut(s) 145
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 143
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 31, 62, 242
Fsp4HI GCNGC 3 cut(s) 31, 62, 242
FspBI CTAG 1 cut(s) 90
GluI GCNGC 3 cut(s) 31, 62, 242
GsuI CTGGAG 2 cut(s) 156, 227
HaeIII GGCC 1 cut(s) 40
HapII CCGG 5 cut(s) 20, 41, 47, 76, 110
Hin1II CATG 1 cut(s) 147
HinfI GANTC 3 cut(s) 117, 127, 287
HpaII CCGG 5 cut(s) 20, 41, 47, 76, 110
HphI GGTGA 4 cut(s) 23, 79, 179, 193
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 53, 116
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 147
KspI CCGCGG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 277
LpnPI CCDG 8 cut(s) 33, 54, 60, 89, 120, 123, 191, 288
Lsp1109I GCAGC 3 cut(s) 17, 48, 253
MaeI CTAG 1 cut(s) 90
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 3 cut(s) 93, 107, 182
MluCI AATT 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 31, 94
MnlI CCTC 2 cut(s) 77, 171
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 218, 249
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 5 cut(s) 20, 41, 47, 76, 110
MspR9I CCNGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 42
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 2 cut(s) 45, 302
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 117, 127, 287
PinAI ACCGGT 1 cut(s) 46
PkrI GCNGC 3 cut(s) 32, 63, 243
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 45, 302
PspPI GGNCC 4 cut(s) 4, 38, 44, 86
PspPPI RGGWCCY 1 cut(s) 86
SacII CCGCGG 1 cut(s) 10
SaqAI TTAA 2 cut(s) 218, 249
SatI GCNGC 3 cut(s) 31, 62, 242
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 4 cut(s) 4, 38, 44, 86
ScrFI CCNGG 1 cut(s) 42
SetI ASST 2 cut(s) 91, 246
Sfr303I CCGCGG 1 cut(s) 10
SgrBI CCGCGG 1 cut(s) 10
SinI GGWCC 3 cut(s) 4, 44, 86
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 261
SsiI CCGC 3 cut(s) 7, 9, 64
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 312
TasI AATT 1 cut(s) 261
TfiI GAWTC 3 cut(s) 117, 127, 287
Tru1I TTAA 2 cut(s) 218, 249
Tru9I TTAA 2 cut(s) 218, 249
TseI GCWGC 3 cut(s) 30, 61, 241
TspDTI ATGAA 3 cut(s) 114, 207, 242
VpaK11BI GGWCC 3 cut(s) 4, 44, 86
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.