Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002453.1

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

96058 .. 100645

Gene Structure 4588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002453.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgattactctcactctgctaaatattagctatgaggtttttcatttgcatgagtgtaatctattggatgctgttattagtctaaaggtggtgtatggatggggccgaggggaacatggtagacttggtttcggcgagaatgataagagcagtaaaatggtccagcaaaaggttcatcttttagatggggaggaaatcgttcaaaaagctgttgccggcctcagacgtattaatcttgatggtctgagatggagagtattcgatgcgaaaggccaggttcttgtttgtgactttcataacatttctgagttcttggaggacattgtaattgagcatgaacatgttgagtgctcttcatctgtaatccaggctttagttctattcaagaagctacaccctgggcataggaagaaagagattgaacattccatcaccaatgctgtacgctacattgaaaatatgcaaataccggatggttcatggtatggagattggggagtttgcttcacatatggtacctggtttgcactaggaggattggcagctgctggcaagacttttagcacttgtgcagccatgcgcaatgggacaacggcaaaatttcatcttctgttgtctgaatgtgccgaggcatcgccgcgcatgccatgcaaggcacatgctgcgcagaactcacacaacggaaatagggctcgacaccgtgaagctgataggaatgatagtcaaggtggcggccacggcgagaatgcacaagaagaactgcaggcaatttgctcagcatctgaagctgatcgggaatttattggagcaactcaagatctcgtagctcaagagatatctggagactcgagagccgttggagcagctggaggaggctctgaggaggtcatacattttggtcaacagctgtcaagaccggagctatttgtatctgcctgcaatgggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

316

Amino Acids

34.7

Weight (kDa)

5.88

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	581, 666
Acc65I	GGTACC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	121
AccII	CGCG	1 cut(s)	640
AciI	CCGC	2 cut(s)	638, 732
AcoI	YGGCCR	1 cut(s)	733
AcsI	RAATTY	2 cut(s)	599, 797
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	2 cut(s)	444, 517
AfiI	CCNNNNNNNGG	2 cut(s)	169, 942
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	4 cut(s)	203, 385, 422, 455
AjnI	CCWGG	4 cut(s)	273, 366, 397, 518
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	837
AlwNI	CAGNNNCTG	2 cut(s)	548, 782
Ama87I	CYCGRG	1 cut(s)	847
AoxI	GGCC	4 cut(s)	103, 217, 271, 733
ApeKI	GCWGC	5 cut(s)	542, 545, 572, 662, 863
ApoI	RAATTY	2 cut(s)	599, 797
AseI	ATTAAT	1 cut(s)	231
Asp700I	GAANNNNTTC	1 cut(s)	198
Asp718I	GGTACC	1 cut(s)	515
AspLEI	GCGC	3 cut(s)	582, 642, 667
AspS9I	GGNCC	2 cut(s)	103, 160
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	847
AvaII	GGWCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	532, 554, 584, 649, 875
BccI	CCATC	6 cut(s)	93, 179, 233, 243, 437, 467
BceAI	ACGGC	3 cut(s)	609, 754, 839
BciT130I	CCWGG	4 cut(s)	275, 368, 399, 520
BcoDI	GTCTC	1 cut(s)	837
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	761
BglII	AGATCT	1 cut(s)	817
BisI	GCNGC	7 cut(s)	543, 546, 573, 638, 663, 733, 864
BlpI	GCTNAGC	1 cut(s)	775
BlsI	GCNGC	7 cut(s)	544, 547, 574, 639, 664, 734, 865
Bme1390I	CCNGG	4 cut(s)	275, 368, 399, 520
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	103, 160
BmiI	GGNNCC	2 cut(s)	104, 517
BmrFI	CCNGG	4 cut(s)	275, 368, 399, 520
BmsI	GCATC	4 cut(s)	58, 253, 641, 788
BpmI	CTGGAG	2 cut(s)	861, 888
Bpu1102I	GCTNAGC	1 cut(s)	775
BpuEI	CTTGAG	2 cut(s)	798, 813
BsaJI	CCNNGG	5 cut(s)	106, 397, 398, 627, 736
BsaWI	WCCGGW	2 cut(s)	469, 916
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 942
Bse118I	RCCGGY	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	589, 946
BseBI	CCWGG	4 cut(s)	275, 368, 399, 520
BseDI	CCNNGG	5 cut(s)	106, 397, 398, 627, 736
BseGI	GGATG	4 cut(s)	73, 104, 478, 951
BseLI	CCNNNNNNNGG	2 cut(s)	169, 942
BseMI	GCAATG	2 cut(s)	589, 946
BseMII	CTCAG	5 cut(s)	235, 236, 297, 789, 870
BseRI	GAGGAG	2 cut(s)	885, 896
BseXI	GCAGC	5 cut(s)	532, 554, 584, 649, 875
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	640
BshFI	GGCC	4 cut(s)	105, 219, 273, 735
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	847
BsiSI	CCGG	3 cut(s)	216, 470, 917
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	169, 942
BsmAI	GTCTC	1 cut(s)	837
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	4 cut(s)	105, 219, 273, 735
BsoBI	CYCGRG	1 cut(s)	847
Bsp1286I	GDGCHC	2 cut(s)	353, 694
Bsp143I	GATC	2 cut(s)	790, 817
Bsp1720I	GCTNAGC	1 cut(s)	775
BspACI	CCGC	2 cut(s)	638, 732
BspANI	GGCC	4 cut(s)	105, 219, 273, 735
BspCNI	CTCAG	5 cut(s)	234, 237, 298, 788, 871
BspFNI	CGCG	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	104, 517
BspMAI	CTGCAG	1 cut(s)	765
BspQI	GCTCTTC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	589, 946
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	5 cut(s)	106, 397, 398, 627, 736
BssMI	GATC	2 cut(s)	790, 817
Bst2UI	CCWGG	4 cut(s)	275, 368, 399, 520
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	358
BstAPI	GCANNNNNTGC	2 cut(s)	648, 662
BstC8I	GCNNGC	5 cut(s)	217, 550, 644, 765, 937
BstDEI	CTNAG	5 cut(s)	221, 245, 306, 775, 879
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	4 cut(s)	73, 104, 478, 951
BstFNI	CGCG	1 cut(s)	640
BstHHI	GCGC	3 cut(s)	582, 642, 667
BstKTI	GATC	2 cut(s)	793, 820
BstMAI	GTCTC	1 cut(s)	837
BstMBI	GATC	2 cut(s)	790, 817
BstMWI	GCNNNNNNNGC	6 cut(s)	643, 648, 662, 738, 785, 860
BstNI	CCWGG	4 cut(s)	275, 368, 399, 520
BstNSI	RCATGY	3 cut(s)	344, 646, 662
BstSCI	CCNGG	4 cut(s)	273, 366, 397, 518
BstSFI	CTRYAG	1 cut(s)	761
BstUI	CGCG	1 cut(s)	640
BstV1I	GCAGC	5 cut(s)	532, 554, 584, 649, 875
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuRI	GGCC	4 cut(s)	105, 219, 273, 735
BtgI	CCRYGG	1 cut(s)	736
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	4 cut(s)	73, 104, 478, 951
Cac8I	GCNNGC	5 cut(s)	217, 550, 644, 765, 937
CaiI	CAGNNNCTG	2 cut(s)	548, 782
CfoI	GCGC	3 cut(s)	582, 642, 667
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	103, 160
CsiI	ACCWGGT	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	443, 516
CviAII	CATG	9 cut(s)	50, 116, 335, 341, 480, 577, 643, 648, 659
CviQI	GTAC	2 cut(s)	443, 516
DdeI	CTNAG	5 cut(s)	221, 245, 306, 775, 879
DpnI	GATC	2 cut(s)	792, 819
DpnII	GATC	2 cut(s)	790, 817
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	847
EcoRII	CCWGG	4 cut(s)	273, 366, 397, 518
EcoRV	GATATC	1 cut(s)	837
EcoT38I	GRGCYC	1 cut(s)	694
FaeI	CATG	9 cut(s)	53, 119, 338, 344, 483, 580, 646, 651, 662
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	9 cut(s)	49, 115, 334, 340, 479, 576, 642, 647, 658
FauNDI	CATATG	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	7 cut(s)	543, 546, 573, 638, 663, 733, 864
FokI	GGATG	3 cut(s)	80, 111, 485
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	7 cut(s)	543, 546, 573, 638, 663, 733, 864
FspBI	CTAG	1 cut(s)	530
FspI	TGCGCA	2 cut(s)	581, 666
GlaI	GCGC	3 cut(s)	581, 641, 666
GluI	GCNGC	7 cut(s)	543, 546, 573, 638, 663, 733, 864
GsuI	CTGGAG	2 cut(s)	861, 888
HaeIII	GGCC	4 cut(s)	105, 219, 273, 735
HapII	CCGG	3 cut(s)	216, 470, 917
HhaI	GCGC	3 cut(s)	582, 642, 667
Hin1II	CATG	9 cut(s)	53, 119, 338, 344, 483, 580, 646, 651, 662
Hin6I	GCGC	3 cut(s)	580, 640, 665
HinP1I	GCGC	3 cut(s)	580, 640, 665
HincII	GTYRAC	1 cut(s)	902
HindII	GTYRAC	1 cut(s)	902
HinfI	GANTC	1 cut(s)	845
HpaII	CCGG	3 cut(s)	216, 470, 917
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	122, 902
Hpy188I	TCNGA	6 cut(s)	224, 246, 307, 619, 784, 880
Hpy188III	TCNNGA	8 cut(s)	236, 385, 794, 815, 830, 840, 849, 912
Hpy8I	GTNNAC	2 cut(s)	122, 902
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	8 cut(s)	49, 463, 527, 572, 651, 749, 763, 939
HpyF10VI	GCNNNNNNNGC	6 cut(s)	643, 648, 662, 738, 785, 860
HpyF3I	CTNAG	5 cut(s)	221, 245, 306, 775, 879
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	9 cut(s)	53, 119, 338, 344, 483, 580, 646, 651, 662
HspAI	GCGC	3 cut(s)	580, 640, 665
KpnI	GGTACC	1 cut(s)	519
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	790, 817
LguI	GCTCTTC	1 cut(s)	358
LmnI	GCTCC	3 cut(s)	806, 860, 919
Lsp1109I	GCAGC	5 cut(s)	532, 554, 584, 649, 875
LweI	GCATC	4 cut(s)	58, 253, 641, 788
MabI	ACCWGGT	1 cut(s)	518
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	2 cut(s)	792, 819
MboI	GATC	2 cut(s)	790, 817
MboII	GAAGA	4 cut(s)	345, 421, 599, 767
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	2 cut(s)	353, 694
MluCI	AATT	4 cut(s)	327, 599, 768, 797
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	838
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	2 cut(s)	48, 339
MspA1I	CMGCKG	3 cut(s)	545, 866, 907
MspI	CCGG	3 cut(s)	216, 470, 917
MspR9I	CCNGG	4 cut(s)	275, 368, 399, 520
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	4 cut(s)	275, 368, 399, 520
MvnI	CGCG	1 cut(s)	640
MwoI	GCNNNNNNNGC	6 cut(s)	643, 648, 662, 738, 785, 860
NaeI	GCCGGC	1 cut(s)	217
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	2 cut(s)	790, 817
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	9 cut(s)	53, 119, 338, 344, 483, 580, 646, 651, 662
NlaIV	GGNNCC	2 cut(s)	104, 517
NmeAIII	GCCGAG	2 cut(s)	131, 652
NmuCI	GTSAC	1 cut(s)	287
NsbI	TGCGCA	2 cut(s)	581, 666
NspI	RCATGY	3 cut(s)	344, 646, 662
PaeI	GCATGC	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	847
PasI	CCCWGGG	1 cut(s)	398
PciI	ACATGT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	358
PctI	GAATGC	1 cut(s)	751
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	198
PkrI	GCNGC	7 cut(s)	544, 547, 574, 639, 664, 734, 865
PleI	GAGTC	1 cut(s)	839
PpsI	GAGTC	1 cut(s)	839
PscI	ACATGT	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	231
Psp6I	CCWGG	4 cut(s)	273, 366, 397, 518
PspGI	CCWGG	4 cut(s)	273, 366, 397, 518
PspN4I	GGNNCC	2 cut(s)	104, 517
PspPI	GGNCC	2 cut(s)	103, 160
PstI	CTGCAG	1 cut(s)	765
PstNI	CAGNNNCTG	2 cut(s)	548, 782
PsuI	RGATCY	1 cut(s)	817
PvuII	CAGCTG	3 cut(s)	545, 866, 907
RsaI	GTAC	2 cut(s)	444, 517
RsaNI	GTAC	2 cut(s)	443, 516
RseI	CAYNNNNRTG	2 cut(s)	48, 339
SapI	GCTCTTC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	7 cut(s)	543, 546, 573, 638, 663, 733, 864
Sau3AI	GATC	2 cut(s)	790, 817
Sau96I	GGNCC	2 cut(s)	103, 160
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	4 cut(s)	275, 368, 399, 520
SduI	GDGCHC	2 cut(s)	353, 694
SexAI	ACCWGGT	1 cut(s)	518
SfaNI	GCATC	4 cut(s)	58, 253, 641, 788
SfcI	CTRYAG	1 cut(s)	761
Sfr274I	CTCGAG	1 cut(s)	847
SinI	GGWCC	1 cut(s)	160
SlaI	CTCGAG	1 cut(s)	847
SmiMI	CAYNNNNRTG	2 cut(s)	48, 339
SmlI	CTYRAG	3 cut(s)	813, 828, 847
SmoI	CTYRAG	3 cut(s)	813, 828, 847
SphI	GCATGC	1 cut(s)	646
Sse9I	AATT	4 cut(s)	327, 599, 768, 797
SsiI	CCGC	2 cut(s)	638, 732
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	4 cut(s)	273, 366, 397, 518
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	3 cut(s)	261, 694, 848
TasI	AATT	4 cut(s)	327, 599, 768, 797
TauI	GCSGC	2 cut(s)	640, 735
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	5 cut(s)	542, 545, 572, 662, 863
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	7 cut(s)	32, 164, 284, 345, 351, 468, 593
TspGWI	ACGGA	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	2 cut(s)	599, 797
XceI	RCATGY	3 cut(s)	344, 646, 662
XhoI	CTCGAG	1 cut(s)	847
XmiI	GTMKAC	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.