Rh7BG231200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
20217392 .. 20226786
9395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG231200.1

Sequence Viewer

Length: 432 bp
ATGGCTTATCGATTGATCCCAAATTCGTTTTCTTCATTTTCCAGGATGTTTGAAGCTAGGTTTGAGCCAATTTTTGCTGTTATTGTCCGTTGGGACTTGAAAGTTGCATCTATTGAAGAAGTTGGGAAGACCAGGTTTTTTAAACTCCTAGAGTTTCAATCCTTTGTTTTGATTGCATTACTCTGTAAAAATTTCAAAGATGAGACTATTGTTGACATCGATGATGAGGAGGAGAGGAGAGGGGAAGACCCTGAAGACCAGATCTGCCTATCCAGAGTCCAGAAGCGCATACATTATGTCTTTCACAATCTCAGACTCACCGATCTCAATCAATCTCCATCAAGACTTGGTCGAAAAGAGGAAATCTGTCGTTCTCACTCAAAAACAAAGGTTGGACTAGCGAGAAGTTTTTTAAGGATGGATTGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.91

Weight (kDa)

8.39

Isoelectric Point (pI)

60.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 10
AcsI RAATTY 2 cut(s) 22, 190
AcuI CTGAAG 1 cut(s) 273
AgsI TTSAA 5 cut(s) 53, 100, 116, 158, 196
AjnI CCWGG 2 cut(s) 41, 131
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 10
ApoI RAATTY 2 cut(s) 22, 190
AspLEI GCGC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 310
BbsI GAAGAC 3 cut(s) 134, 252, 261
BccI CCATC 2 cut(s) 346, 412
BciT130I CCWGG 2 cut(s) 43, 133
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 3 cut(s) 57, 149, 398
BglII AGATCT 1 cut(s) 261
Bme1390I CCNGG 2 cut(s) 43, 133
BmrFI CCNGG 2 cut(s) 43, 133
BmsI GCATC 1 cut(s) 116
BpiI GAAGAC 3 cut(s) 134, 252, 261
Bsa29I ATCGAT 2 cut(s) 10, 219
BsaBI GATNNNNATC 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 2 cut(s) 43, 133
BseCI ATCGAT 2 cut(s) 10, 219
BseGI GGATG 2 cut(s) 51, 423
BseJI GATNNNNATC 1 cut(s) 327
BseMII CTCAG 1 cut(s) 325
BseRI GAGGAG 3 cut(s) 242, 245, 250
BshVI ATCGAT 2 cut(s) 10, 219
BslFI GGGAC 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 15, 261, 322
BspCNI CTCAG 1 cut(s) 324
BspDI ATCGAT 2 cut(s) 10, 219
BspPI GGATC 1 cut(s) 10
BssMI GATC 3 cut(s) 15, 261, 322
Bst2UI CCWGG 2 cut(s) 43, 133
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 51, 423
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 18, 264, 325
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 15, 261, 322
BstNI CCWGG 2 cut(s) 43, 133
BstSCI CCNGG 2 cut(s) 41, 131
BstV2I GAAGAC 3 cut(s) 134, 252, 261
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
Bsu15I ATCGAT 2 cut(s) 10, 219
BsuTUI ATCGAT 2 cut(s) 10, 219
BtsCI GGATG 2 cut(s) 51, 423
CfoI GCGC 1 cut(s) 288
ClaI ATCGAT 2 cut(s) 10, 219
CsiI ACCWGGT 1 cut(s) 131
CviJI RGCY 3 cut(s) 5, 56, 67
CviKI_1 RGCY 3 cut(s) 5, 56, 67
DdeI CTNAG 1 cut(s) 311
DpnI GATC 3 cut(s) 17, 263, 324
DpnII GATC 3 cut(s) 15, 261, 322
DraI TTTAAA 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 41, 131
FaiI YATR 2 cut(s) 290, 297
FaqI GGGAC 1 cut(s) 107
FokI GGATG 1 cut(s) 58
FspBI CTAG 3 cut(s) 57, 149, 398
GlaI GCGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 288
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 276, 315
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 3 cut(s) 273, 280, 342
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 107, 176
HpyF3I CTNAG 1 cut(s) 311
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 15, 261, 322
LpnPI CCDG 8 cut(s) 28, 55, 118, 145, 264, 272, 286, 293
LweI GCATC 1 cut(s) 116
MabI ACCWGGT 1 cut(s) 131
MaeI CTAG 3 cut(s) 57, 149, 398
MalI GATC 3 cut(s) 17, 263, 324
MboI GATC 3 cut(s) 15, 261, 322
MboII GAAGA 5 cut(s) 24, 128, 139, 257, 266
MflI RGATCY 1 cut(s) 261
MluCI AATT 3 cut(s) 22, 69, 190
MlyI GAGTC 2 cut(s) 285, 309
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 5 cut(s) 220, 223, 228, 233, 352
MseI TTAA 2 cut(s) 141, 413
MspR9I CCNGG 2 cut(s) 43, 133
MvaI CCWGG 2 cut(s) 43, 133
NdeII GATC 3 cut(s) 15, 261, 322
PflFI GACNNNGTC 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 41
PleI GAGTC 2 cut(s) 284, 309
PpsI GAGTC 2 cut(s) 284, 309
Psp6I CCWGG 2 cut(s) 41, 131
PspGI CCWGG 2 cut(s) 41, 131
PsuI RGATCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 141, 413
Sau3AI GATC 3 cut(s) 15, 261, 322
SchI GAGTC 2 cut(s) 285, 309
ScrFI CCNGG 2 cut(s) 43, 133
SetI ASST 4 cut(s) 58, 62, 137, 393
SexAI ACCWGGT 1 cut(s) 131
SfaNI GCATC 1 cut(s) 116
Sse9I AATT 3 cut(s) 22, 69, 190
SspMI CTAG 3 cut(s) 57, 149, 398
StyD4I CCNGG 2 cut(s) 41, 131
TaqI TCGA 3 cut(s) 10, 219, 352
TasI AATT 3 cut(s) 22, 69, 190
Tru1I TTAA 2 cut(s) 141, 413
Tru9I TTAA 2 cut(s) 141, 413
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 77
Tth111I GACNNNGTC 1 cut(s) 348
XapI RAATTY 2 cut(s) 22, 190
XspI CTAG 3 cut(s) 57, 149, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.