Rmu_sc0002349.1_g000005

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002349.1
OG0000689
Physical Location & Seq
Forward (+)
33098 .. 37010
3913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002349.1_g000005.1.cds

Sequence Viewer

Length: 1152 bp
atgcaagcattagctttattcaggaagttatatcccgggcatagaaagaagcatatcgatgatttcatcacaagtgcagcatggtaccttgaagacatgcagacacctgatggctcatggtatggaaaatggggaatctgcttcatctatggaacatggtttgcaattcgagggttgaaagctgctggcaggacttacaaatattgtaaggcaatacacagaggtgttgaatttttacttaaaatacagaaagatgatggtggttggggagagagctatacttcttgtacaaacaagatctatacacctcttgaaggagagcgatcaaacttggtgcagaccgcaatgggattaattcatggtggacaggcggagagagacattactcccattcacagagctgcaaagcttttgattaattctcaaatggaaaatggagatttcccccaaaagcaccgtgaggtgcgagttatcggggtggtccctgacctaacttctataaccaagtttgtagatgaggagagcaccaacctcgtcacaaggttcttctatcgccttaacagaataaggacttccggtgtgatctctggtgtcacaagaatcgcccagcaccggctagcacatcccaagccccatctttgtcgacctcaagcccactatcaatcgccgaacaccgttctggtgccaatcaccgatctggtgccaaacaccctcaatcaccaatctgaagctcccatcccgctgcagtgccggaacctcaccaaacctagaccggtcggagatgggctacaggtgagcgactggagaagaggacctggagaagacgaaggcgaagatgggaccggtcgaagatgggctgcaggtgaggacctggagatgggctgctttggggctaggaccggtcggagatggattgcaggtccggtagccggattcgggattccggtcaccaatcgctggattctggtcaccgatcgccggattccggtaatcgatcgccggatttcaatcaccggtagccggattccggtcaccaatcacaggagtccagttaccggtcgccggattcctgtcaccggtcgccggagtccgctgccggccactagtcacaggagcacaacatggtggaggatgacttttctctctaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

383

Amino Acids

43.29

Weight (kDa)

10.07

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 851
Acc36I ACCTGC 2 cut(s) 851, 908
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 3 cut(s) 84, 682, 700
AccB7I CCANNNNNTGG 1 cut(s) 957
AccI GTMKAC 1 cut(s) 643
AciI CCGC 4 cut(s) 342, 371, 740, 1091
AcoI YGGCCR 1 cut(s) 1098
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 2 cut(s) 86, 289
AgeI ACCGGT 6 cut(s) 772, 842, 899, 1013, 1055, 1076
AgsI TTSAA 5 cut(s) 92, 178, 230, 314, 1008
AhlI ACTAGT 1 cut(s) 1103
AjnI CCWGG 2 cut(s) 814, 870
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 6 cut(s) 14, 182, 276, 401, 409, 731
AluI AGCT 6 cut(s) 14, 182, 276, 401, 409, 731
Alw21I GWGCWC 2 cut(s) 527, 1118
Alw26I GTCTC 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 1098
ApeKI GCWGC 7 cut(s) 77, 182, 401, 742, 857, 882, 1093
ApoI RAATTY 1 cut(s) 230
AseI ATTAAT 2 cut(s) 353, 417
AsiGI ACCGGT 6 cut(s) 772, 842, 899, 1013, 1055, 1076
Asp718I GGTACC 1 cut(s) 84
AspS9I GGNCC 6 cut(s) 481, 812, 840, 868, 897, 920
AsuC2I CCSGG 2 cut(s) 36, 37
AsuNHI GCTAGC 1 cut(s) 616
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 6 cut(s) 481, 812, 840, 868, 897, 920
BanI GGYRCC 3 cut(s) 84, 682, 700
BbsI GAAGAC 2 cut(s) 99, 828
Bbv12I GWGCWC 2 cut(s) 527, 1118
BbvI GCAGC 7 cut(s) 89, 169, 388, 729, 844, 869, 1080
BccI CCATC 9 cut(s) 104, 251, 642, 743, 776, 830, 846, 871, 903
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BciT130I CCWGG 2 cut(s) 816, 872
BcnI CCSGG 2 cut(s) 36, 37
BcoDI GTCTC 1 cut(s) 372
BcuI ACTAGT 1 cut(s) 1103
BfaI CTAG 4 cut(s) 617, 768, 894, 1104
BfmI CTRYAG 3 cut(s) 743, 788, 858
BfuAI ACCTGC 2 cut(s) 851, 908
BglII AGATCT 1 cut(s) 297
BisI GCNGC 7 cut(s) 78, 183, 402, 743, 858, 883, 1094
BlsI GCNGC 7 cut(s) 79, 184, 403, 744, 859, 884, 1095
Bme1390I CCNGG 4 cut(s) 36, 37, 816, 872
Bme18I GGWCC 6 cut(s) 481, 812, 840, 868, 897, 920
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 6 cut(s) 481, 812, 840, 868, 897, 920
BmiI GGNNCC 6 cut(s) 86, 483, 684, 702, 755, 841
BmrFI CCNGG 4 cut(s) 36, 37, 816, 872
BmtI GCTAGC 1 cut(s) 620
BpiI GAAGAC 2 cut(s) 99, 828
BpmI CTGGAG 3 cut(s) 823, 837, 893
BpuEI CTTGAG 1 cut(s) 633
BpuMI CCSGG 2 cut(s) 36, 37
Bsa29I ATCGAT 2 cut(s) 57, 993
BsaBI GATNNNNATC 1 cut(s) 1007
BsaJI CCNNGG 1 cut(s) 35
Bse118I RCCGGY 8 cut(s) 612, 772, 842, 899, 1013, 1055, 1076, 1096
Bse1I ACTGG 2 cut(s) 806, 1049
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 1007
BseBI CCWGG 2 cut(s) 816, 872
BseCI ATCGAT 2 cut(s) 57, 993
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 3 cut(s) 622, 735, 1137
BseJI GATNNNNATC 1 cut(s) 1007
BseMI GCAATG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 806, 1049
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 7 cut(s) 89, 169, 388, 729, 844, 869, 1080
BseYI CCCAGC 1 cut(s) 606
BsgI GTGCAG 2 cut(s) 96, 356
Bsh1285I CGRYCG 7 cut(s) 777, 847, 904, 976, 997, 1060, 1081
BshFI GGCC 1 cut(s) 1100
BshNI GGYRCC 3 cut(s) 84, 682, 700
BshTI ACCGGT 6 cut(s) 772, 842, 899, 1013, 1055, 1076
BshVI ATCGAT 2 cut(s) 57, 993
BsiEI CGRYCG 7 cut(s) 777, 847, 904, 976, 997, 1060, 1081
BsiHKAI GWGCWC 2 cut(s) 527, 1118
BsiHKCI CYCGRG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 467, 853
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 2 cut(s) 467, 853
BsnI GGCC 1 cut(s) 1100
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 527, 1118
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 6 cut(s) 297, 323, 582, 694, 973, 994
BspACI CCGC 4 cut(s) 342, 371, 740, 1091
BspANI GGCC 1 cut(s) 1100
BspDI ATCGAT 2 cut(s) 57, 993
BspLI GGNNCC 6 cut(s) 86, 483, 684, 702, 755, 841
BspMAI CTGCAG 2 cut(s) 747, 862
BspMI ACCTGC 2 cut(s) 851, 908
BspOI GCTAGC 1 cut(s) 620
BspT107I GGYRCC 3 cut(s) 84, 682, 700
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 8 cut(s) 612, 772, 842, 899, 1013, 1055, 1076, 1096
BsrGI TGTACA 1 cut(s) 287
BsrI ACTGG 2 cut(s) 806, 1049
BssAI RCCGGY 8 cut(s) 612, 772, 842, 899, 1013, 1055, 1076, 1096
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 6 cut(s) 297, 323, 582, 694, 973, 994
Bst2UI CCWGG 2 cut(s) 816, 872
Bst4CI ACNGT 2 cut(s) 458, 676
Bst6I CTCTTC 1 cut(s) 802
BstAUI TGTACA 1 cut(s) 287
BstC8I GCNNGC 4 cut(s) 6, 187, 618, 1098
BstDEI CTNAG 1 cut(s) 1146
BstEII GGTNACC 3 cut(s) 946, 967, 1030
BstENI CCTNNNNNAGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 622, 735, 1137
BstKTI GATC 6 cut(s) 300, 326, 585, 697, 976, 997
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 6 cut(s) 297, 323, 582, 694, 973, 994
BstMCI CGRYCG 7 cut(s) 777, 847, 904, 976, 997, 1060, 1081
BstNI CCWGG 2 cut(s) 816, 872
BstNSI RCATGY 1 cut(s) 100
BstPI GGTNACC 3 cut(s) 946, 967, 1030
BstSCI CCNGG 4 cut(s) 34, 35, 814, 870
BstSFI CTRYAG 3 cut(s) 743, 788, 858
BstV1I GCAGC 7 cut(s) 89, 169, 388, 729, 844, 869, 1080
BstV2I GAAGAC 2 cut(s) 99, 828
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
Bsu15I ATCGAT 2 cut(s) 57, 993
BsuRI GGCC 1 cut(s) 1100
BsuTUI ATCGAT 2 cut(s) 57, 993
BtsCI GGATG 3 cut(s) 622, 735, 1137
BtsI GCAGTG 1 cut(s) 752
BtsIMutI CAGTG 1 cut(s) 752
BveI ACCTGC 2 cut(s) 851, 908
Cac8I GCNNGC 4 cut(s) 6, 187, 618, 1098
Cfr10I RCCGGY 8 cut(s) 612, 772, 842, 899, 1013, 1055, 1076, 1096
Cfr13I GGNCC 6 cut(s) 481, 812, 840, 868, 897, 920
Cfr9I CCCGGG 1 cut(s) 35
ClaI ATCGAT 2 cut(s) 57, 993
Csp6I GTAC 2 cut(s) 85, 288
CspAI ACCGGT 6 cut(s) 772, 842, 899, 1013, 1055, 1076
CviAII CATG 6 cut(s) 81, 97, 117, 156, 359, 1122
CviQI GTAC 2 cut(s) 85, 288
DdeI CTNAG 1 cut(s) 1146
DpnI GATC 6 cut(s) 299, 325, 584, 696, 975, 996
DpnII GATC 6 cut(s) 297, 323, 582, 694, 973, 994
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 802
EciI GGCGGA 1 cut(s) 386
Eco47I GGWCC 6 cut(s) 481, 812, 840, 868, 897, 920
Eco57I CTGAAG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 35
Eco91I GGTNACC 3 cut(s) 946, 967, 1030
EcoNI CCTNNNNNAGG 1 cut(s) 312
EcoO109I RGGNCCY 2 cut(s) 812, 868
EcoO65I GGTNACC 3 cut(s) 946, 967, 1030
EcoRII CCWGG 2 cut(s) 814, 870
FaeI CATG 6 cut(s) 84, 100, 120, 159, 362, 1125
FaqI GGGAC 2 cut(s) 467, 853
FatI CATG 6 cut(s) 80, 96, 116, 155, 358, 1121
FauI CCCGC 1 cut(s) 747
FblI GTMKAC 1 cut(s) 643
Fnu4HI GCNGC 7 cut(s) 78, 183, 402, 743, 858, 883, 1094
FokI GGATG 3 cut(s) 609, 722, 1144
Fsp4HI GCNGC 7 cut(s) 78, 183, 402, 743, 858, 883, 1094
FspBI CTAG 4 cut(s) 617, 768, 894, 1104
GluI GCNGC 7 cut(s) 78, 183, 402, 743, 858, 883, 1094
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 3 cut(s) 823, 837, 893
HaeIII GGCC 1 cut(s) 1100
Hin1II CATG 6 cut(s) 84, 100, 120, 159, 362, 1125
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HindIII AAGCTT 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 365, 644
Hpy188I TCNGA 3 cut(s) 727, 779, 906
Hpy188III TCNNGA 3 cut(s) 22, 311, 937
Hpy8I GTNNAC 2 cut(s) 365, 644
HpyAV CCTTC 2 cut(s) 308, 821
HpyCH4III ACNGT 2 cut(s) 458, 676
HpyCH4V TGCA 9 cut(s) 4, 77, 100, 164, 337, 404, 745, 860, 917
HpyF3I CTNAG 1 cut(s) 1146
Hsp92II CATG 6 cut(s) 84, 100, 120, 159, 362, 1125
KpnI GGTACC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 1096
KroNI GCCGGC 1 cut(s) 1098
Kzo9I GATC 6 cut(s) 297, 323, 582, 694, 973, 994
LmnI GCTCC 2 cut(s) 736, 1113
Lsp1109I GCAGC 7 cut(s) 89, 169, 388, 729, 844, 869, 1080
MaeI CTAG 4 cut(s) 617, 768, 894, 1104
MaeIII GTNAC 8 cut(s) 535, 592, 946, 967, 1030, 1051, 1072, 1106
MalI GATC 6 cut(s) 299, 325, 584, 696, 975, 996
MboI GATC 6 cut(s) 297, 323, 582, 694, 973, 994
MboII GAAGA 6 cut(s) 104, 538, 819, 833, 845, 861
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 2 cut(s) 527, 1118
MluCI AATT 4 cut(s) 165, 230, 354, 418
MlyI GAGTC 2 cut(s) 1054, 1096
MmeI TCCRAC 2 cut(s) 757, 884
MroNI GCCGGC 1 cut(s) 1096
MseI TTAA 4 cut(s) 240, 353, 417, 558
MslI CAYNNNNRTG 2 cut(s) 57, 222
MspA1I CMGCKG 2 cut(s) 742, 1093
MspR9I CCNGG 4 cut(s) 36, 37, 816, 872
MvaI CCWGG 2 cut(s) 816, 872
NaeI GCCGGC 1 cut(s) 1098
NciI CCSGG 2 cut(s) 36, 37
NdeII GATC 6 cut(s) 297, 323, 582, 694, 973, 994
NgoMIV GCCGGC 1 cut(s) 1096
NheI GCTAGC 1 cut(s) 616
NlaIII CATG 6 cut(s) 84, 100, 120, 159, 362, 1125
NlaIV GGNNCC 6 cut(s) 86, 483, 684, 702, 755, 841
NmuCI GTSAC 7 cut(s) 535, 592, 946, 967, 1030, 1072, 1106
NspI RCATGY 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 851
PdiI GCCGGC 1 cut(s) 1098
PfeI GAWTC 8 cut(s) 135, 600, 933, 940, 961, 982, 1024, 1066
PflMI CCANNNNNTGG 1 cut(s) 957
PinAI ACCGGT 6 cut(s) 772, 842, 899, 1013, 1055, 1076
PkrI GCNGC 7 cut(s) 79, 184, 403, 744, 859, 884, 1095
Ple19I CGATCG 2 cut(s) 976, 997
PleI GAGTC 2 cut(s) 1053, 1095
PpsI GAGTC 2 cut(s) 1053, 1095
PpuMI RGGWCCY 2 cut(s) 812, 868
PshBI ATTAAT 2 cut(s) 353, 417
Psp5II RGGWCCY 2 cut(s) 812, 868
Psp6I CCWGG 2 cut(s) 814, 870
PspEI GGTNACC 3 cut(s) 946, 967, 1030
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 2 cut(s) 814, 870
PspN4I GGNNCC 6 cut(s) 86, 483, 684, 702, 755, 841
PspPI GGNCC 6 cut(s) 481, 812, 840, 868, 897, 920
PspPPI RGGWCCY 2 cut(s) 812, 868
PstI CTGCAG 2 cut(s) 747, 862
PsuI RGATCY 1 cut(s) 297
PvuI CGATCG 2 cut(s) 976, 997
RsaI GTAC 2 cut(s) 86, 289
RsaNI GTAC 2 cut(s) 85, 288
RseI CAYNNNNRTG 2 cut(s) 57, 222
SalI GTCGAC 1 cut(s) 642
SaqAI TTAA 4 cut(s) 240, 353, 417, 558
SatI GCNGC 7 cut(s) 78, 183, 402, 743, 858, 883, 1094
Sau3AI GATC 6 cut(s) 297, 323, 582, 694, 973, 994
Sau96I GGNCC 6 cut(s) 481, 812, 840, 868, 897, 920
SchI GAGTC 2 cut(s) 1054, 1096
ScrFI CCNGG 4 cut(s) 36, 37, 816, 872
SduI GDGCHC 2 cut(s) 527, 1118
SfcI CTRYAG 3 cut(s) 743, 788, 858
SinI GGWCC 6 cut(s) 481, 812, 840, 868, 897, 920
SmaI CCCGGG 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 57, 222
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
SpeI ACTAGT 1 cut(s) 1103
Sse9I AATT 4 cut(s) 165, 230, 354, 418
SsiI CCGC 4 cut(s) 342, 371, 740, 1091
SspI AATATT 1 cut(s) 203
SspMI CTAG 4 cut(s) 617, 768, 894, 1104
StyD4I CCNGG 4 cut(s) 34, 35, 814, 870
TaaI ACNGT 2 cut(s) 458, 676
TaqI TCGA 5 cut(s) 57, 169, 643, 847, 993
TasI AATT 4 cut(s) 165, 230, 354, 418
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 8 cut(s) 135, 600, 933, 940, 961, 982, 1024, 1066
Tru1I TTAA 4 cut(s) 240, 353, 417, 558
Tru9I TTAA 4 cut(s) 240, 353, 417, 558
TscAI CASTG 1 cut(s) 752
TseFI GTSAC 7 cut(s) 535, 592, 946, 967, 1030, 1072, 1106
TseI GCWGC 7 cut(s) 77, 182, 401, 742, 857, 882, 1093
Tsp45I GTSAC 7 cut(s) 535, 592, 946, 967, 1030, 1072, 1106
TspDTI ATGAA 3 cut(s) 55, 133, 347
TspMI CCCGGG 1 cut(s) 35
TspRI CASTG 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 957
VpaK11BI GGWCC 6 cut(s) 481, 812, 840, 868, 897, 920
VspI ATTAAT 2 cut(s) 353, 417
XagI CCTNNNNNAGG 1 cut(s) 312
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 100
XmaI CCCGGG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 643
XspI CTAG 4 cut(s) 617, 768, 894, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.