Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286409.1

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 823

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286409.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgctatacactaccttgaaaatatacaaatgccggatggttcatgtaggaggattggcagcagctggcaagactttcagcacttgtgcagccatgcgcaaagcggttagttttctcctcacaacgcagagagagaatggtggttggggagagagctatctttcatgtccgcaaaagacatacattcctctcgaaggaaatcgatccaatttagtacatactgcttgggctatgatgggtctcattcatgcgggacaggcagaaagagacccaacacctcttcatcgtgcagcaaagtttataattaattctcaattggaaaatggtgattttccccagcaggaaatcactggagtcttcatgaagaactgcatgctacattatgcagcttatagaaatatatacccactctgggctcttgcagaataccgcaagcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

9.51

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
Acc16I	TGCGCA	1 cut(s)	98
AciI	CCGC	5 cut(s)	104, 170, 251, 430, 436
AclWI	GGATC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	194, 412
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	3 cut(s)	65, 156, 389
AluI	AGCT	3 cut(s)	65, 156, 389
Alw26I	GTCTC	2 cut(s)	245, 261
AlwI	GGATC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	65
ApeKI	GCWGC	5 cut(s)	59, 62, 89, 290, 386
AseI	ATTAAT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	5 cut(s)	71, 74, 101, 302, 398
BccI	CCATC	2 cut(s)	31, 229
BcoDI	GTCTC	2 cut(s)	245, 261
BisI	GCNGC	5 cut(s)	60, 63, 90, 291, 387
BlsI	GCNGC	5 cut(s)	61, 64, 91, 292, 388
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	202
BsaI	GGTCTC	2 cut(s)	245, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 412
Bse1I	ACTGG	1 cut(s)	355
BseCI	ATCGAT	1 cut(s)	202
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	194, 412
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	5 cut(s)	71, 74, 101, 302, 398
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	2 cut(s)	108, 309
BshVI	ATCGAT	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	194, 412
BsmAI	GTCTC	2 cut(s)	245, 261
BsmFI	GGGAC	1 cut(s)	267
Bso31I	GGTCTC	2 cut(s)	245, 261
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	5 cut(s)	104, 170, 251, 430, 436
BspDI	ATCGAT	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	360
BspPI	GGATC	1 cut(s)	198
BspTNI	GGTCTC	2 cut(s)	245, 261
BsrI	ACTGG	1 cut(s)	355
BssMI	GATC	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	67, 374, 434
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	2 cut(s)	245, 261
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	376
BstV1I	GCAGC	5 cut(s)	71, 74, 101, 302, 398
BstV2I	GAAGAC	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	67, 374, 434
CaiI	CAGNNNCTG	1 cut(s)	65
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	6 cut(s)	44, 94, 165, 248, 361, 373
CviJI	RGCY	6 cut(s)	65, 92, 156, 230, 389, 416
CviKI_1	RGCY	6 cut(s)	65, 92, 156, 230, 389, 416
CviQI	GTAC	1 cut(s)	215
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	2 cut(s)	245, 261
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	6 cut(s)	47, 97, 168, 251, 364, 376
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	6 cut(s)	43, 93, 164, 247, 360, 372
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	5 cut(s)	60, 63, 90, 291, 387
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	5 cut(s)	60, 63, 90, 291, 387
FspI	TGCGCA	1 cut(s)	98
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	5 cut(s)	60, 63, 90, 291, 387
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	372
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	47, 97, 168, 251, 364, 376
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	338
Hpy188III	TCNNGA	2 cut(s)	191, 361
HpyAV	CCTTC	1 cut(s)	188
HpyCH4V	TGCA	5 cut(s)	89, 290, 372, 386, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	6 cut(s)	47, 97, 168, 251, 364, 376
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	203
LpnPI	CCDG	7 cut(s)	47, 51, 242, 326, 336, 350, 397
Lsp1109I	GCAGC	5 cut(s)	71, 74, 101, 302, 398
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	3 cut(s)	272, 349, 376
MfeI	CAATTG	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	4 cut(s)	208, 303, 307, 314
MlyI	GAGTC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	44, 128, 198, 288
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	6 cut(s)	47, 97, 168, 251, 364, 376
NsbI	TGCGCA	1 cut(s)	98
NspI	RCATGY	1 cut(s)	376
PaeI	GCATGC	1 cut(s)	376
PagI	TCATGA	1 cut(s)	360
PkrI	GCNGC	5 cut(s)	61, 64, 91, 292, 388
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	5 cut(s)	60, 63, 90, 291, 387
Sau3AI	GATC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	5 cut(s)	17, 67, 158, 280, 391
SphI	GCATGC	1 cut(s)	376
Sse9I	AATT	4 cut(s)	208, 303, 307, 314
SsiI	CCGC	5 cut(s)	104, 170, 251, 430, 436
TaqI	TCGA	2 cut(s)	192, 202
TasI	AATT	4 cut(s)	208, 303, 307, 314
TatI	WGTACW	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	5 cut(s)	59, 62, 89, 290, 386
TspDTI	ATGAA	6 cut(s)	32, 153, 236, 272, 349, 377
TspRI	CASTG	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	192
XceI	RCATGY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.