RLG00000001225

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000689
Physical Location & Seq
Forward (+)
12317468 .. 12318591
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001225

Sequence Viewer

Length: 399 bp
ATGGAGCTTCAAATTCCAGCGATCCTGAAAGTCCCGGCAGTGGCGACCACGCCTTCAACACCTTCTTCGTCAACCTCGAGCCCGGCGTCGGCTAGCACATCCCAAGCCTCATCTTCGTTGACCTCAAGCCCACCGTCAATCGCAGAATACCCTTCTGGTGCCAATCACCGATCTGATGCCGATCACCGATCTGAAGCTCCCATCCCGCTGCGGTGCCGGAACCTCACCAAACTGAGACCGGTCGGAGATGGGCTGCAGGTGAGCGACTCGAGAAGAGGACCTGGAGAAGACGAAGGCGGAGATGGGACCAGTCGGAGATGGGCTGTAGGTGAGCGACTGGAGAAGAGGACCTGGAGATGGGCTGCGTCGGGGCTAGGACCGGTCGGAGATGGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

13.76

Weight (kDa)

7.96

Isoelectric Point (pI)

79.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 158, 213
AciI CCGC 3 cut(s) 206, 211, 297
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 86
AfiI CCNNNNNNNGG 3 cut(s) 40, 88, 357
AgeI ACCGGT 2 cut(s) 238, 379
AgsI TTSAA 2 cut(s) 11, 57
AjnI CCWGG 2 cut(s) 280, 350
AluBI AGCT 2 cut(s) 7, 197
AluI AGCT 2 cut(s) 7, 197
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 2 cut(s) 76, 268
ApeKI GCWGC 3 cut(s) 208, 253, 362
ApoI RAATTY 1 cut(s) 12
AsiGI ACCGGT 2 cut(s) 238, 379
AspS9I GGNCC 4 cut(s) 278, 306, 348, 377
AsuC2I CCSGG 2 cut(s) 35, 83
AsuHPI GGTGA 5 cut(s) 158, 176, 217, 271, 341
AsuNHI GCTAGC 1 cut(s) 92
AvaI CYCGRG 2 cut(s) 76, 268
AvaII GGWCC 4 cut(s) 278, 306, 348, 377
BanI GGYRCC 2 cut(s) 158, 213
BanII GRGCYC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 195, 240, 349
BccI CCATC 6 cut(s) 209, 242, 296, 312, 351, 383
BciT130I CCWGG 2 cut(s) 282, 352
BcnI CCSGG 2 cut(s) 35, 83
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 2 cut(s) 93, 374
BfmI CTRYAG 3 cut(s) 254, 324, 395
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 3 cut(s) 209, 254, 363
BlsI GCNGC 3 cut(s) 210, 255, 364
Bme1390I CCNGG 4 cut(s) 35, 83, 282, 352
Bme18I GGWCC 4 cut(s) 278, 306, 348, 377
BmeT110I CYCGRG 2 cut(s) 76, 268
BmgT120I GGNCC 4 cut(s) 278, 306, 348, 377
BmiI GGNNCC 4 cut(s) 160, 215, 221, 307
BmrFI CCNGG 4 cut(s) 35, 83, 282, 352
BmsI GCATC 1 cut(s) 166
BmtI GCTAGC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 3 cut(s) 303, 359, 373
BpuEI CTTGAG 1 cut(s) 109
BpuMI CCSGG 2 cut(s) 35, 83
BsaBI GATNNNNATC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 238, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 88, 357
Bse118I RCCGGY 2 cut(s) 238, 379
Bse1I ACTGG 2 cut(s) 309, 342
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 2 cut(s) 282, 352
BseGI GGATG 2 cut(s) 98, 201
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 40, 88, 357
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 309, 342
BseXI GCAGC 3 cut(s) 195, 240, 349
Bsh1285I CGRYCG 2 cut(s) 243, 384
BshNI GGYRCC 2 cut(s) 158, 213
BshTI ACCGGT 2 cut(s) 238, 379
BsiEI CGRYCG 2 cut(s) 243, 384
BsiHKCI CYCGRG 2 cut(s) 76, 268
BsiSI CCGG 5 cut(s) 35, 83, 217, 239, 380
BslFI GGGAC 2 cut(s) 17, 319
BslI CCNNNNNNNGG 3 cut(s) 40, 88, 357
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 17, 319
Bso31I GGTCTC 1 cut(s) 229
BsoBI CYCGRG 2 cut(s) 76, 268
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 4 cut(s) 21, 170, 181, 188
BspACI CCGC 3 cut(s) 206, 211, 297
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 160, 215, 221, 307
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 16
BspT107I GGYRCC 2 cut(s) 158, 213
BspTNI GGTCTC 1 cut(s) 229
BsrFI RCCGGY 2 cut(s) 238, 379
BsrI ACTGG 2 cut(s) 309, 342
BssAI RCCGGY 2 cut(s) 238, 379
BssMI GATC 4 cut(s) 21, 170, 181, 188
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 282, 352
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 2 cut(s) 268, 338
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 98, 201
BstKTI GATC 4 cut(s) 24, 173, 184, 191
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 4 cut(s) 21, 170, 181, 188
BstMCI CGRYCG 2 cut(s) 243, 384
BstNI CCWGG 2 cut(s) 282, 352
BstSCI CCNGG 4 cut(s) 33, 81, 280, 350
BstSFI CTRYAG 3 cut(s) 254, 324, 395
BstV1I GCAGC 3 cut(s) 195, 240, 349
BstV2I GAAGAC 1 cut(s) 294
BtsCI GGATG 2 cut(s) 98, 201
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 2 cut(s) 238, 379
Cfr13I GGNCC 4 cut(s) 278, 306, 348, 377
CseI GACGC 2 cut(s) 75, 354
CspAI ACCGGT 2 cut(s) 238, 379
DdeI CTNAG 1 cut(s) 233
DpnI GATC 4 cut(s) 23, 172, 183, 190
DpnII GATC 4 cut(s) 21, 170, 181, 188
Eam1104I CTCTTC 2 cut(s) 268, 338
EarI CTCTTC 2 cut(s) 268, 338
EciI GGCGGA 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 4 cut(s) 278, 306, 348, 377
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 76, 268
EcoO109I RGGNCCY 2 cut(s) 278, 348
EcoRII CCWGG 2 cut(s) 280, 350
EcoT38I GRGCYC 1 cut(s) 83
FaqI GGGAC 2 cut(s) 17, 319
FauI CCCGC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 209, 254, 363
FokI GGATG 2 cut(s) 85, 188
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 209, 254, 363
FspBI CTAG 2 cut(s) 93, 374
GluI GCNGC 3 cut(s) 209, 254, 363
GsuI CTGGAG 3 cut(s) 303, 359, 373
HapII CCGG 5 cut(s) 35, 83, 217, 239, 380
HgaI GACGC 2 cut(s) 75, 354
Hin1I GRCGYC 1 cut(s) 86
HincII GTYRAC 2 cut(s) 72, 120
HindII GTYRAC 2 cut(s) 72, 120
HinfI GANTC 1 cut(s) 266
HpaII CCGG 5 cut(s) 35, 83, 217, 239, 380
HphI GGTGA 5 cut(s) 158, 176, 217, 271, 341
Hpy166II GTNNAC 2 cut(s) 72, 120
Hpy188I TCNGA 5 cut(s) 175, 193, 245, 315, 386
Hpy188III TCNNGA 2 cut(s) 25, 270
Hpy8I GTNNAC 2 cut(s) 72, 120
Hpy99I CGWCG 2 cut(s) 91, 370
HpyAV CCTTC 4 cut(s) 63, 72, 162, 287
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 86
Kzo9I GATC 4 cut(s) 21, 170, 181, 188
LmnI GCTCC 2 cut(s) 4, 202
Lsp1109I GCAGC 3 cut(s) 195, 240, 349
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 93, 374
MalI GATC 4 cut(s) 23, 172, 183, 190
MboI GATC 4 cut(s) 21, 170, 181, 188
MboII GAAGA 5 cut(s) 57, 105, 285, 299, 355
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 12
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 3 cut(s) 223, 293, 364
MnlI CCTC 6 cut(s) 85, 118, 133, 233, 269, 339
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 5 cut(s) 35, 83, 217, 239, 380
MspR9I CCNGG 4 cut(s) 35, 83, 282, 352
MvaI CCWGG 2 cut(s) 282, 352
NciI CCSGG 2 cut(s) 35, 83
NdeII GATC 4 cut(s) 21, 170, 181, 188
NheI GCTAGC 1 cut(s) 92
NlaIV GGNNCC 4 cut(s) 160, 215, 221, 307
PaeR7I CTCGAG 2 cut(s) 76, 268
PaqCI CACCTGC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 83
PinAI ACCGGT 2 cut(s) 238, 379
PkrI GCNGC 3 cut(s) 210, 255, 364
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 2 cut(s) 278, 348
Psp5II RGGWCCY 2 cut(s) 278, 348
Psp6I CCWGG 2 cut(s) 280, 350
PspGI CCWGG 2 cut(s) 280, 350
PspN4I GGNNCC 4 cut(s) 160, 215, 221, 307
PspPI GGNCC 4 cut(s) 278, 306, 348, 377
PspPPI RGGWCCY 2 cut(s) 278, 348
PspXI VCTCGAGB 1 cut(s) 76
PstI CTGCAG 1 cut(s) 258
SatI GCNGC 3 cut(s) 209, 254, 363
Sau3AI GATC 4 cut(s) 21, 170, 181, 188
Sau96I GGNCC 4 cut(s) 278, 306, 348, 377
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 4 cut(s) 35, 83, 282, 352
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 3 cut(s) 254, 324, 395
Sfr274I CTCGAG 2 cut(s) 76, 268
SinI GGWCC 4 cut(s) 278, 306, 348, 377
SlaI CTCGAG 2 cut(s) 76, 268
SmlI CTYRAG 3 cut(s) 76, 124, 268
SmoI CTYRAG 3 cut(s) 76, 124, 268
Sse9I AATT 1 cut(s) 12
SsiI CCGC 3 cut(s) 206, 211, 297
SspMI CTAG 2 cut(s) 93, 374
StyD4I CCNGG 4 cut(s) 33, 81, 280, 350
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 77, 269
TasI AATT 1 cut(s) 12
TscAI CASTG 1 cut(s) 45
TseI GCWGC 3 cut(s) 208, 253, 362
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 4 cut(s) 278, 306, 348, 377
XapI RAATTY 1 cut(s) 12
XhoI CTCGAG 2 cut(s) 76, 268
XspI CTAG 2 cut(s) 93, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.