Rroxscaffold_3G00233460

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000689
Physical Location & Seq
Reverse (-)
19439528 .. 19440479
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233460.1

Sequence Viewer

Length: 414 bp
ATGTCCGCCACCAACAACTCCACTGTTGCAGTTGAGCGAGGGACCACACCTCAACAACGCATGGGAAGACCTTTTTGCATTCTTGATTTTATCAAATCAATATCATGCATACATGTTGATCGGGGAACTCGTCCAATGAGTTGTCATATTCTTACTTGTTTTATTTCCTCACTGTTAAATCCGACAGAGTTCTTGGAGGACATTGTAATTGAGCATGAACATGTTGAGTGCACTTCATCCGTAATCCAGGCTTTAGTTCTGTTCAAGAAGCTACACCCCGGGCATAGGAAGAAAGAGATTGAACATTCCATTACCAATGCTGTACGCTACATTGAAAATATGCAAATGTCGGATGGTTCATGGGTATGGAGATTGGGGAGTTTGCTTCACATATGGTACCTGGGTTTGCACTAG

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

7.11

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 396
AciI CCGC 1 cut(s) 6
AfaI GTAC 2 cut(s) 324, 398
AfiI CCNNNNNNNGG 1 cut(s) 285
AflIII ACRYGT 2 cut(s) 112, 220
AgsI TTSAA 3 cut(s) 265, 302, 335
AjnI CCWGG 2 cut(s) 246, 399
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw21I GWGCWC 1 cut(s) 233
Alw44I GTGCAC 1 cut(s) 229
Ama87I CYCGRG 1 cut(s) 278
ApaLI GTGCAC 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 2 cut(s) 279, 280
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 233
BaeI ACNNNNGTAYC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 233
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 2 cut(s) 248, 401
BcnI CCSGG 2 cut(s) 279, 280
BfaI CTAG 1 cut(s) 412
Bme1390I CCNGG 4 cut(s) 248, 279, 280, 401
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 43, 398
BmrFI CCNGG 4 cut(s) 248, 279, 280, 401
BpiI GAAGAC 1 cut(s) 73
BpuMI CCSGG 2 cut(s) 279, 280
BsaJI CCNNGG 3 cut(s) 277, 278, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseBI CCWGG 2 cut(s) 248, 401
BseDI CCNNGG 3 cut(s) 277, 278, 400
BseGI GGATG 2 cut(s) 236, 358
BseLI CCNNNNNNNGG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 43, 398
BspT107I GGYRCC 1 cut(s) 396
BssECI CCNNGG 3 cut(s) 277, 278, 400
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 248, 401
Bst4CI ACNGT 2 cut(s) 25, 174
BstF5I GGATG 2 cut(s) 236, 358
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 2 cut(s) 248, 401
BstNSI RCATGY 2 cut(s) 116, 224
BstSCI CCNGG 4 cut(s) 246, 277, 278, 399
BstSLI GKGCMC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 236, 358
BtsIMutI CAGTG 2 cut(s) 21, 170
Cfr13I GGNCC 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 278
Csp6I GTAC 2 cut(s) 323, 397
CviAII CATG 6 cut(s) 61, 105, 113, 215, 221, 360
CviJI RGCY 2 cut(s) 251, 271
CviKI_1 RGCY 2 cut(s) 251, 271
CviQI GTAC 2 cut(s) 323, 397
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 246, 399
EcoT22I ATGCAT 1 cut(s) 110
FaeI CATG 6 cut(s) 64, 108, 116, 218, 224, 363
FaqI GGGAC 1 cut(s) 55
FatI CATG 6 cut(s) 60, 104, 112, 214, 220, 359
FauNDI CATATG 1 cut(s) 392
FokI GGATG 2 cut(s) 223, 365
FspBI CTAG 1 cut(s) 412
HapII CCGG 1 cut(s) 279
Hin1II CATG 6 cut(s) 64, 108, 116, 218, 224, 363
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 183, 352
Hpy188III TCNNGA 2 cut(s) 83, 265
Hpy8I GTNNAC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 25, 174
HpyCH4V TGCA 6 cut(s) 29, 78, 108, 231, 343, 409
Hsp92II CATG 6 cut(s) 64, 108, 116, 218, 224, 363
KpnI GGTACC 1 cut(s) 400
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 233, 260, 292, 386
MaeI CTAG 1 cut(s) 412
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 78, 301
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 207
MmeI TCCRAC 2 cut(s) 206, 330
MnlI CCTC 4 cut(s) 32, 60, 178, 190
Mph1103I ATGCAT 1 cut(s) 110
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 2 cut(s) 219, 364
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 4 cut(s) 248, 279, 280, 401
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 2 cut(s) 248, 401
NciI CCSGG 2 cut(s) 279, 280
NdeI CATATG 1 cut(s) 392
NdeII GATC 1 cut(s) 118
NlaIII CATG 6 cut(s) 64, 108, 116, 218, 224, 363
NlaIV GGNNCC 2 cut(s) 43, 398
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 2 cut(s) 116, 224
PciI ACATGT 2 cut(s) 112, 220
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PctI GAATGC 1 cut(s) 78
PscI ACATGT 2 cut(s) 112, 220
Psp6I CCWGG 2 cut(s) 246, 399
PspGI CCWGG 2 cut(s) 246, 399
PspN4I GGNNCC 2 cut(s) 43, 398
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 324, 398
RsaNI GTAC 2 cut(s) 323, 397
RseI CAYNNNNRTG 2 cut(s) 219, 364
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 4 cut(s) 248, 279, 280, 401
SduI GDGCHC 1 cut(s) 233
SetI ASST 4 cut(s) 52, 73, 273, 402
SinI GGWCC 1 cut(s) 42
SmaI CCCGGG 1 cut(s) 280
SmiMI CAYNNNNRTG 2 cut(s) 219, 364
Sse9I AATT 1 cut(s) 207
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 412
StyD4I CCNGG 4 cut(s) 246, 277, 278, 399
TaaI ACNGT 2 cut(s) 25, 174
TasI AATT 1 cut(s) 207
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 28, 177
TspDTI ATGAA 3 cut(s) 225, 231, 348
TspGWI ACGGA 1 cut(s) 229
TspMI CCCGGG 1 cut(s) 278
TspRI CASTG 2 cut(s) 28, 177
VneI GTGCAC 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 42
XceI RCATGY 2 cut(s) 116, 224
XmaI CCCGGG 1 cut(s) 278
XspI CTAG 1 cut(s) 412
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.