Rw6G005920

oxidosqualene cyclase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000689
Physical Location & Seq
Forward (+)
9504326 .. 9504893
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005920.1

Sequence Viewer

Length: 258 bp
ATGCCGGATGGTTCATGGTATGGAGATTGGGGAGTTTGCTTCACATATGGTACCTGGTTTGCACTAGGAGGATTGGCAGCTGCTGGCAAGACTTTTAGCACTTGTGCAGCCATGCGCAATGGGGTTAGCTTTCTACTTATGGTGCAGAGAGAGAACGGTGGTTGGGGAGAGAGTTATCTTTCATGTCCACAAAAGAGACCCAACACCTCTTCATCACGCAGCAAAGTTTATAATCAATTCTCAACTGGAAAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110
Pfam Domains
Protein Families
Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

85

Amino Acids

9.35

Weight (kDa)

9.22

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 2 - 63 4.9e-16 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
Acc16I TGCGCA 1 cut(s) 116
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AfaI GTAC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 2 cut(s) 80, 129
AluI AGCT 2 cut(s) 80, 129
Alw26I GTCTC 1 cut(s) 190
AlwNI CAGNNNCTG 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 77, 80, 107, 219
Asp718I GGTACC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 67, 89, 119, 231
BccI CCATC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 65
BisI GCNGC 4 cut(s) 78, 81, 108, 220
BlsI GCNGC 4 cut(s) 79, 82, 109, 221
Bme1390I CCNGG 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 4 cut(s) 67, 89, 119, 231
BsgI GTGCAG 2 cut(s) 126, 164
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 190
Bso31I GGTCTC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 4 cut(s) 67, 89, 119, 231
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 117
CsiI ACCWGGT 1 cut(s) 53
Csp6I GTAC 1 cut(s) 51
CviAII CATG 3 cut(s) 15, 112, 183
CviJI RGCY 3 cut(s) 80, 110, 129
CviKI_1 RGCY 3 cut(s) 80, 110, 129
CviQI GTAC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 18, 115, 186
FaiI YATR 8 cut(s) 16, 21, 46, 48, 113, 140, 184, 231
FatI CATG 3 cut(s) 14, 111, 182
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 4 cut(s) 78, 81, 108, 220
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 78, 81, 108, 220
FspBI CTAG 1 cut(s) 65
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 78, 81, 108, 220
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 18, 115, 186
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 62, 107, 145
Hsp92II CATG 3 cut(s) 18, 115, 186
HspAI GCGC 1 cut(s) 115
KpnI GGTACC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 18, 40, 67, 69, 231
Lsp1109I GCAGC 4 cut(s) 67, 89, 119, 231
MabI ACCWGGT 1 cut(s) 53
MaeI CTAG 1 cut(s) 65
MboII GAAGA 1 cut(s) 201
MluCI AATT 1 cut(s) 236
MnlI CCTC 2 cut(s) 62, 217
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
NdeI CATATG 1 cut(s) 46
NlaIII CATG 3 cut(s) 18, 115, 186
NlaIV GGNNCC 1 cut(s) 52
NsbI TGCGCA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 79, 82, 109, 221
PsiI TTATAA 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SatI GCNGC 4 cut(s) 78, 81, 108, 220
ScrFI CCNGG 1 cut(s) 55
SetI ASST 4 cut(s) 56, 82, 131, 209
SexAI ACCWGGT 1 cut(s) 53
Sse9I AATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 158
TasI AATT 1 cut(s) 236
TseI GCWGC 4 cut(s) 77, 80, 107, 219
TspDTI ATGAA 2 cut(s) 171, 201
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.