Rroxscaffold_3G00236890

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000689
Physical Location & Seq
Forward (+)
24341494 .. 24344451
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236890.1

Sequence Viewer

Length: 501 bp
ATGGTGGTGTATCAGCCTGGCTGCCAACAGGAGCTCCACAATGGTTGGAGGTATGGAAAATGGGGAATCTGCTTCATCTATGGAACATGGTTTGCAATTCGAGGGTTGAAAGCTGCTGGCAGGACTTACAAATATTGTGAGGCAATACGCAGAGGTGTTGAATTTTTACTCAAAATACAGAAAGATGATGGTGGTTGGGGAGAGAGCTATACTTCTTGTACAAACAAGATTTATACACCTCTTGAAGGAGACCGATCAAACTTGGTGCAGACCGCAATTGGATTAATGGGATTAATTCATGGTGGACAGGCGGAGAGAGACATTACTCCCATTCACAGAGCTGCGAAGCTTTTGATTAATTCTCAATTGGAAAATGGAGATTTCCCCCAACAGGAATTGATGGGGGTTTTCAATGTTAATGCCATGTTACACTATCCATCGTACAGGAATATCTTCCCAATTTGGGCTCTCGCAGAATATCGCTCCCTTGCCTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

166

Amino Acids

18.84

Weight (kDa)

8.67

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 12 - 161 5.1e-30 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 273, 311
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 2 cut(s) 220, 443
AfiI CCNNNNNNNGG 3 cut(s) 245, 391, 463
AgsI TTSAA 4 cut(s) 109, 161, 245, 412
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 5 cut(s) 34, 113, 207, 341, 349
AluI AGCT 5 cut(s) 34, 113, 207, 341, 349
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 243, 312
ApeKI GCWGC 3 cut(s) 21, 113, 341
ApoI RAATTY 1 cut(s) 161
AseI ATTAAT 3 cut(s) 284, 293, 357
Asp700I GAANNNNTTC 1 cut(s) 452
BanII GRGCYC 2 cut(s) 36, 469
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 8, 100, 328
BccI CCATC 3 cut(s) 182, 394, 445
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 243, 312
BisI GCNGC 3 cut(s) 22, 114, 342
BlsI GCNGC 3 cut(s) 23, 115, 343
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 391, 463
BseBI CCWGG 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 245, 391, 463
BseRI GAGGAG 1 cut(s) 484
BseXI GCAGC 3 cut(s) 8, 100, 328
BsgI GTGCAG 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 245, 391, 463
BsmAI GTCTC 2 cut(s) 243, 312
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 36, 469
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 2 cut(s) 273, 311
BspTNI GGTCTC 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 218
BssMI GATC 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 118
BstENI CCTNNNNNAGG 1 cut(s) 243
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 2 cut(s) 243, 312
BstMBI GATC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 3 cut(s) 8, 100, 328
Cac8I GCNNGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 219, 442
CspCI CAANNNNNGTGG 2 cut(s) 26, 61
CviAII CATG 3 cut(s) 87, 299, 424
CviJI RGCY 8 cut(s) 16, 21, 34, 113, 207, 341, 349, 467
CviKI_1 RGCY 8 cut(s) 16, 21, 34, 113, 207, 341, 349, 467
CviQI GTAC 2 cut(s) 219, 442
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 2 cut(s) 36, 469
Eco31I GGTCTC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 2 cut(s) 36, 469
FaeI CATG 3 cut(s) 90, 302, 427
FaiI YATR 7 cut(s) 54, 81, 88, 210, 234, 300, 425
FatI CATG 3 cut(s) 86, 298, 423
Fnu4HI GCNGC 3 cut(s) 22, 114, 342
FriOI GRGCYC 2 cut(s) 36, 469
Fsp4HI GCNGC 3 cut(s) 22, 114, 342
GluI GCNGC 3 cut(s) 22, 114, 342
Hin1II CATG 3 cut(s) 90, 302, 427
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 305
Hpy188III TCNNGA 2 cut(s) 242, 498
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 95, 268
Hsp92II CATG 3 cut(s) 90, 302, 427
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 3 cut(s) 31, 39, 488
LpnPI CCDG 8 cut(s) 3, 14, 30, 102, 106, 293, 377, 430
Lsp1109I GCAGC 3 cut(s) 8, 100, 328
MaeIII GTNAC 1 cut(s) 426
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 1 cut(s) 445
MfeI CAATTG 2 cut(s) 276, 365
MhlI GDGCHC 2 cut(s) 36, 469
MluCI AATT 8 cut(s) 96, 161, 276, 294, 358, 365, 395, 459
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 5 cut(s) 42, 95, 133, 146, 249
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 4 cut(s) 284, 293, 357, 417
MspR9I CCNGG 1 cut(s) 18
MunI CAATTG 2 cut(s) 276, 365
MvaI CCWGG 1 cut(s) 18
NdeII GATC 1 cut(s) 254
NlaIII CATG 3 cut(s) 90, 302, 427
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 3 cut(s) 23, 115, 343
PshBI ATTAAT 3 cut(s) 284, 293, 357
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
RsaI GTAC 2 cut(s) 220, 443
RsaNI GTAC 2 cut(s) 219, 442
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 284, 293, 357, 417
SatI GCNGC 3 cut(s) 22, 114, 342
Sau3AI GATC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 2 cut(s) 36, 469
SetI ASST 8 cut(s) 36, 53, 115, 157, 209, 241, 343, 351
Sse9I AATT 8 cut(s) 96, 161, 276, 294, 358, 365, 395, 459
SsiI CCGC 2 cut(s) 273, 311
SspI AATATT 1 cut(s) 134
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 16
TaqI TCGA 1 cut(s) 100
TaqII GACCGA 1 cut(s) 267
TasI AATT 8 cut(s) 96, 161, 276, 294, 358, 365, 395, 459
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 4 cut(s) 284, 293, 357, 417
Tru9I TTAA 4 cut(s) 284, 293, 357, 417
TseI GCWGC 3 cut(s) 21, 113, 341
TspDTI ATGAA 2 cut(s) 64, 287
VspI ATTAAT 3 cut(s) 284, 293, 357
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.