RchiOBHm_Chr3g0455021

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000689
Physical Location & Seq
Forward (+)
4868538 .. 4869509
972 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42201

Sequence Viewer

Length: 396 bp
ATGCTAATTTTGTCTTGCTTGTTTGTGATTTTCTTCTCCTCACGTAGCCAGGAGATAATGATACAATGGCCTCTGGCTTTTATGTTTATGACTTTATCAACTGCTCATAACAAGATGGTGGATATTGCTGCTGGATGGCATTCTACTGCACTAACAGATGATGGAGAGGTGTATGTATGGGGCCGAGGGGAACATGGTAGACTTGGTTTCGGCGAGAATGATAAGAGCAGTAAAATGGTCCAGCAAAAGGTTCATCTTTTAGTTGGGGAGGATATCGTTCAGAAAGCTGTTGCCGGCCTCAGACGTATTAATCTTGATGGTCTGAGATGGAGAGTATTCGATGCGAAAGGCCAGGTTCTTGTTTGTGACTTTCATAATATTTCTGGTAACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

131

Amino Acids

14.77

Weight (kDa)

6.96

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 34 - 94 4.3e-12 RCC1-like domain
RCC1_2 PF13540 40 - 66 3.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 54 - 94 1.6e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 247
AjnI CCWGG 2 cut(s) 48, 351
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
AoxI GGCC 4 cut(s) 68, 181, 295, 349
ApeKI GCWGC 1 cut(s) 128
AseI ATTAAT 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 181, 238
AvaII GGWCC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 115
BccI CCATC 5 cut(s) 109, 129, 155, 311, 321
BciT130I CCWGG 2 cut(s) 50, 353
BfaI CTAG 1 cut(s) 394
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 50, 353
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 181, 238
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 50, 353
BmsI GCATC 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 293
BseBI CCWGG 2 cut(s) 50, 353
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 2 cut(s) 313, 314
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 4 cut(s) 70, 183, 297, 351
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 247
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 4 cut(s) 70, 183, 297, 351
BspANI GGCC 4 cut(s) 70, 183, 297, 351
BspCNI CTCAG 2 cut(s) 312, 315
BspLI GGNNCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 184
Bst2UI CCWGG 2 cut(s) 50, 353
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 299, 323
BstF5I GGATG 1 cut(s) 140
BstNI CCWGG 2 cut(s) 50, 353
BstSCI CCNGG 2 cut(s) 48, 351
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 4 cut(s) 70, 183, 297, 351
BtsCI GGATG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 181, 238
CviAII CATG 1 cut(s) 194
CviJI RGCY 7 cut(s) 48, 70, 77, 183, 287, 297, 351
CviKI_1 RGCY 7 cut(s) 48, 70, 77, 183, 287, 297, 351
DdeI CTNAG 2 cut(s) 299, 323
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 48, 351
EcoRV GATATC 1 cut(s) 274
FaeI CATG 1 cut(s) 197
FaiI YATR 7 cut(s) 83, 89, 108, 174, 178, 195, 375
FatI CATG 1 cut(s) 193
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 394
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 4 cut(s) 70, 183, 297, 351
HapII CCGG 1 cut(s) 294
Hin1II CATG 1 cut(s) 197
HpaII CCGG 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 3 cut(s) 282, 302, 324
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4IV ACGT 2 cut(s) 43, 304
HpyCH4V TGCA 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 299, 323
HpySE526I ACGT 2 cut(s) 43, 304
Hsp92II CATG 1 cut(s) 197
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
LpnPI CCDG 9 cut(s) 35, 59, 62, 117, 254, 307, 338, 365, 369
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 394
MaeII ACGT 2 cut(s) 43, 304
MaeIII GTNAC 2 cut(s) 365, 386
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 6
MnlI CCTC 6 cut(s) 49, 81, 160, 179, 262, 308
MroNI GCCGGC 1 cut(s) 293
MseI TTAA 1 cut(s) 309
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 50, 353
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 2 cut(s) 50, 353
NaeI GCCGGC 1 cut(s) 295
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 182
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 365
PctI GAATGC 1 cut(s) 139
PdiI GCCGGC 1 cut(s) 295
PkrI GCNGC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 48, 351
PspGI CCWGG 2 cut(s) 48, 351
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 2 cut(s) 181, 238
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 181, 238
ScrFI CCNGG 2 cut(s) 50, 353
SetI ASST 6 cut(s) 46, 171, 252, 289, 307, 357
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 238
Sse9I AATT 1 cut(s) 6
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 48, 351
TaiI ACGT 2 cut(s) 46, 307
TaqI TCGA 1 cut(s) 339
TasI AATT 1 cut(s) 6
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 242, 362
VpaK11BI GGWCC 1 cut(s) 238
VspI ATTAAT 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.