Rroxscaffold_3G00236880

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000689
Physical Location & Seq
Forward (+)
24330714 .. 24334850
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236880.1

Sequence Viewer

Length: 723 bp
ATGAACTGCTACTGCCGCTTGACTTACTTGCCTATGTCGTACCTGTTTGGGAAAAGATTTGTTGGCCCCATCACGCCTCTCATTCTACAGCTGAGAGAAGAATTGTACAATGAGCCATACAATGAAATTCAATGGGGCAAAGTACGCCATCGCTGTGCAAAGGAGGATAACTACTATCCCCATGGCAAGTTACAGTGTTTGTTTTGGGATACTCTTCACACAGTTTATGAGCCTCTTCTTTCTTGCTGGCCCTTCAAAAAGTTGAGAGAGAAGGCTCTGCAAGAAACTATTGGACACATTTATTATGAAGATGAAAATAGTAGATACATAACAATTGGAGCTGGGGAAAAGCCATTAATGATGCTTGCTTGCTGGGTTGAAGATCCGAATGGAGAATCCTTTAAGAAGCATCTTGCAAGAGTTGCAGATTACATATGGGTGGCAGAAGATGGAATAACTGCGCAGAGTTTTGGTAGCCAAGCGTGGGATGCTAGTCTTTCGGTTCAAGCTTTACTTGCTGGAAATCTCACGGATGAACTTGGACCTATTAGAGATAATCCTTCTGGTGACTTCTTAGCCCGTTTCCGTCACATTTCCAAAGGTGGTTGGACTTTCTCTGACCGAGATCATGGATGGCAAGTTTCTGATTGTACTGCAGAGGGTTTGACGGTGACTTTTCTCTCCTGTGCCTTTCTGGATTTGAGGACTGAGCCTCATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

240

Amino Acids

27.65

Weight (kDa)

5.62

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 462
AciI CCGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 377
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 4 cut(s) 41, 107, 144, 652
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 4 cut(s) 131, 256, 380, 506
AluBI AGCT 3 cut(s) 91, 341, 509
AluI AGCT 3 cut(s) 91, 341, 509
AlwI GGATC 1 cut(s) 377
AoxI GGCC 2 cut(s) 64, 248
ApoI RAATTY 1 cut(s) 126
AseI ATTAAT 1 cut(s) 356
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 3 cut(s) 65, 249, 542
AsuHPI GGTGA 2 cut(s) 578, 682
AvaII GGWCC 1 cut(s) 542
BccI CCATC 4 cut(s) 77, 156, 443, 627
BciVI GTATCC 1 cut(s) 202
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 2 cut(s) 86, 654
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 3 cut(s) 65, 249, 542
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 3 cut(s) 351, 418, 478
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 484
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 4 cut(s) 493, 538, 638, 715
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 83, 699
BseYI CCCAGC 2 cut(s) 341, 372
BshFI GGCC 2 cut(s) 66, 250
BslI CCNNNNNNNGG 1 cut(s) 484
BsnI GGCC 2 cut(s) 66, 250
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 382, 625
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 66, 250
BspCNI CTCAG 2 cut(s) 84, 700
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 2 cut(s) 382, 625
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 3 cut(s) 195, 223, 670
Bst6I CTCTTC 2 cut(s) 219, 240
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 248, 366, 370
BstDEI CTNAG 3 cut(s) 92, 574, 708
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 4 cut(s) 493, 538, 638, 715
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 385, 628
BstMBI GATC 2 cut(s) 382, 625
BstMWI GCNNNNNNNGC 5 cut(s) 15, 144, 422, 488, 515
BstSFI CTRYAG 2 cut(s) 86, 654
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 66, 250
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 4 cut(s) 493, 538, 638, 715
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 3 cut(s) 248, 366, 370
CfoI GCGC 1 cut(s) 463
Cfr13I GGNCC 3 cut(s) 65, 249, 542
Csp6I GTAC 4 cut(s) 40, 106, 143, 651
CviAII CATG 2 cut(s) 182, 629
CviQI GTAC 4 cut(s) 40, 106, 143, 651
DdeI CTNAG 3 cut(s) 92, 574, 708
DpnI GATC 2 cut(s) 384, 627
DpnII GATC 2 cut(s) 382, 625
Eam1104I CTCTTC 2 cut(s) 219, 240
EarI CTCTTC 2 cut(s) 219, 240
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 185, 632
FaiI YATR 9 cut(s) 35, 118, 183, 228, 306, 329, 434, 436, 630
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FatI CATG 2 cut(s) 181, 628
FauNDI CATATG 1 cut(s) 434
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 4 cut(s) 500, 545, 645, 702
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 1 cut(s) 492
FspI TGCGCA 1 cut(s) 462
GlaI GCGC 1 cut(s) 462
GluI GCNGC 1 cut(s) 16
GsaI CCCAGC 2 cut(s) 345, 376
HaeIII GGCC 2 cut(s) 66, 250
HhaI GCGC 1 cut(s) 463
Hin1II CATG 2 cut(s) 185, 632
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 1 cut(s) 395
HphI GGTGA 2 cut(s) 578, 682
Hpy188I TCNGA 3 cut(s) 387, 619, 646
Hpy188III TCNNGA 1 cut(s) 695
HpyAV CCTTC 3 cut(s) 262, 265, 570
HpyCH4III ACNGT 3 cut(s) 195, 223, 670
HpyCH4V TGCA 5 cut(s) 158, 280, 416, 425, 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 144, 422, 488, 515
HpyF3I CTNAG 3 cut(s) 92, 574, 708
Hsp92II CATG 2 cut(s) 185, 632
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 2 cut(s) 382, 625
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 8 cut(s) 56, 232, 327, 358, 504, 549, 680, 697
LweI GCATC 3 cut(s) 351, 418, 478
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 4 cut(s) 189, 566, 587, 670
MalI GATC 2 cut(s) 384, 627
MboI GATC 2 cut(s) 382, 625
MboII GAAGA 6 cut(s) 110, 206, 227, 320, 392, 458
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 382
MluCI AATT 3 cut(s) 101, 126, 333
MmeI TCCRAC 1 cut(s) 587
MnlI CCTC 6 cut(s) 87, 157, 243, 652, 696, 723
MseI TTAA 3 cut(s) 356, 402, 721
MslI CAYNNNNRTG 2 cut(s) 153, 437
MspA1I CMGCKG 1 cut(s) 91
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 5 cut(s) 15, 144, 422, 488, 515
NcoI CCATGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 434
NdeII GATC 2 cut(s) 382, 625
NlaIII CATG 2 cut(s) 185, 632
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 3 cut(s) 566, 587, 670
NsbI TGCGCA 1 cut(s) 462
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 1 cut(s) 17
PshBI ATTAAT 1 cut(s) 356
PspFI CCCAGC 2 cut(s) 341, 372
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 65, 249, 542
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 4 cut(s) 41, 107, 144, 652
RsaNI GTAC 4 cut(s) 40, 106, 143, 651
RseI CAYNNNNRTG 2 cut(s) 153, 437
SaqAI TTAA 3 cut(s) 356, 402, 721
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 382, 625
Sau96I GGNCC 3 cut(s) 65, 249, 542
SetI ASST 6 cut(s) 45, 93, 343, 511, 547, 604
SfaNI GCATC 3 cut(s) 351, 418, 478
SfcI CTRYAG 2 cut(s) 86, 654
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 2 cut(s) 153, 437
Sse9I AATT 3 cut(s) 101, 126, 333
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 3 cut(s) 195, 223, 670
TaqII GACCGA 1 cut(s) 636
TasI AATT 3 cut(s) 101, 126, 333
TatI WGTACW 2 cut(s) 105, 650
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 356, 402, 721
Tru9I TTAA 3 cut(s) 356, 402, 721
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 3 cut(s) 566, 587, 670
Tsp45I GTSAC 3 cut(s) 566, 587, 670
TspDTI ATGAA 5 cut(s) 17, 138, 321, 327, 549
TspGWI ACGGA 2 cut(s) 545, 575
TspRI CASTG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 542
VspI ATTAAT 1 cut(s) 356
XapI RAATTY 1 cut(s) 126
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.