Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

43113186 .. 43114434

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTCTATTACTTTCCAGGTATTACTGCTGCTTCTGGGATAGCAGCAGAGCTGGGGATCCCATTAACGCACAGAGGTGTTGCAAATAGTCTGTTAAATCCGACAGAGTTCTTGGAGGACATTGTAATTGAGCATGAACATGTTGAGTGCACTTCATCTGTAATCCAGGCTTTAGTTCTGTTCAAGAAGCTACACCCTGGGCATAGGAAGAAAGAGATTGAACATTCCATCACCAATGCTGTACGCTACATTGAAAATATGCAAATGCCGGATGGTTCATGGTATGGAGATTGGGGAGTTTGCTTCACATATGGTACCTGGTTTGCACTAGGAGGATTGGCAGCTGCTGGCAAGACTTTTAGCACTTGTGCAGCCATGCGCAATGGGGTTAGCAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

134

Amino Acids

14.69

Weight (kDa)

6.58

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_C	PF13243	69 - 126	4.7e-13	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	52, 65
AfaI	GTAC	2 cut(s)	243, 316
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	184, 221, 254
AjnI	CCWGG	4 cut(s)	16, 165, 196, 317
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	3 cut(s)	52, 190, 344
AluI	AGCT	3 cut(s)	52, 190, 344
Alw21I	GWGCWC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	148
AlwI	GGATC	2 cut(s)	52, 65
AlwNI	CAGNNNCTG	1 cut(s)	347
ApaLI	GTGCAC	1 cut(s)	148
ApeKI	GCWGC	5 cut(s)	29, 44, 341, 344, 371
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	5 cut(s)	16, 56, 331, 353, 383
BccI	CCATC	2 cut(s)	236, 266
BciT130I	CCWGG	4 cut(s)	18, 167, 198, 319
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	5 cut(s)	30, 45, 342, 345, 372
BlsI	GCNGC	5 cut(s)	31, 46, 343, 346, 373
Bme1390I	CCNGG	4 cut(s)	18, 167, 198, 319
BmiI	GGNNCC	2 cut(s)	59, 316
BmrFI	CCNGG	4 cut(s)	18, 167, 198, 319
BsaJI	CCNNGG	2 cut(s)	196, 197
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	4 cut(s)	18, 167, 198, 319
BseDI	CCNNGG	2 cut(s)	196, 197
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	5 cut(s)	16, 56, 331, 353, 383
BseYI	CCCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	59, 316
BspPI	GGATC	2 cut(s)	52, 65
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	196, 197
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	4 cut(s)	18, 167, 198, 319
BstC8I	GCNNGC	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstNI	CCWGG	4 cut(s)	18, 167, 198, 319
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	4 cut(s)	16, 165, 196, 317
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	5 cut(s)	16, 56, 331, 353, 383
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	381
CsiI	ACCWGGT	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	242, 315
CviAII	CATG	4 cut(s)	134, 140, 279, 376
CviJI	RGCY	5 cut(s)	52, 170, 190, 344, 374
CviKI_1	RGCY	5 cut(s)	52, 170, 190, 344, 374
CviQI	GTAC	2 cut(s)	242, 315
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EcoRII	CCWGG	4 cut(s)	16, 165, 196, 317
FaeI	CATG	4 cut(s)	137, 143, 282, 379
FaiI	YATR	9 cut(s)	135, 141, 204, 260, 280, 285, 310, 312, 377
FatI	CATG	4 cut(s)	133, 139, 278, 375
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	30, 45, 342, 345, 372
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	5 cut(s)	30, 45, 342, 345, 372
FspBI	CTAG	1 cut(s)	329
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	5 cut(s)	30, 45, 342, 345, 372
GsaI	CCCAGC	1 cut(s)	56
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	4 cut(s)	137, 143, 282, 379
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	83, 150, 262, 326, 371
Hsp92II	CATG	4 cut(s)	137, 143, 282, 379
HspAI	GCGC	1 cut(s)	379
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	57
Lsp1109I	GCAGC	5 cut(s)	16, 56, 331, 353, 383
MabI	ACCWGGT	1 cut(s)	317
MaeI	CTAG	1 cut(s)	329
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	68, 109, 326
MseI	TTAA	2 cut(s)	65, 95
MslI	CAYNNNNRTG	2 cut(s)	75, 138
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	4 cut(s)	18, 167, 198, 319
MvaI	CCWGG	4 cut(s)	18, 167, 198, 319
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	4 cut(s)	137, 143, 282, 379
NlaIV	GGNNCC	2 cut(s)	59, 316
NsbI	TGCGCA	1 cut(s)	380
NspI	RCATGY	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	75
PasI	CCCWGGG	1 cut(s)	197
PciI	ACATGT	1 cut(s)	139
PkrI	GCNGC	5 cut(s)	31, 46, 343, 346, 373
PscI	ACATGT	1 cut(s)	139
Psp6I	CCWGG	4 cut(s)	16, 165, 196, 317
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	4 cut(s)	16, 165, 196, 317
PspN4I	GGNNCC	2 cut(s)	59, 316
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	57
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	243, 316
RsaNI	GTAC	2 cut(s)	242, 315
RseI	CAYNNNNRTG	2 cut(s)	75, 138
SaqAI	TTAA	2 cut(s)	65, 95
SatI	GCNGC	5 cut(s)	30, 45, 342, 345, 372
Sau3AI	GATC	1 cut(s)	57
ScrFI	CCNGG	4 cut(s)	18, 167, 198, 319
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	6 cut(s)	22, 54, 79, 192, 320, 346
SexAI	ACCWGGT	1 cut(s)	317
SmiMI	CAYNNNNRTG	2 cut(s)	75, 138
Sse9I	AATT	1 cut(s)	126
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	16, 165, 196, 317
TasI	AATT	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	65, 95
Tru9I	TTAA	2 cut(s)	65, 95
TseI	GCWGC	5 cut(s)	29, 44, 341, 344, 371
TspDTI	ATGAA	3 cut(s)	144, 150, 267
VneI	GTGCAC	1 cut(s)	148
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.