Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Forward (+)

25009715 .. 25010348

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1237300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 132 bp

ATGTTAGCTCTTATTGAAGCTGATCAGGAAATTATGGGAGTGCTTAACAAGAACTATATGATCAGTTCTGCTGCCTACAGAAATATCTCACCCATATGGACACTTGGAGCATATCGCAGGAATGCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009555 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010685 GO:0010686 GO:0016043 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0016871 GO:0019742 GO:0019745 GO:0031559 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110

Pfam Domains

Protein Families

Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

44

Amino Acids

4.87

Weight (kDa)

8.19

Isoelectric Point (pI)

73.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	2 cut(s)	8, 20
AluI	AGCT	2 cut(s)	8, 20
ApeKI	GCWGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	58
BclI	TGATCA	2 cut(s)	22, 60
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	22, 60
BssMI	GATC	2 cut(s)	22, 60
BstKTI	GATC	2 cut(s)	25, 63
BstMBI	GATC	2 cut(s)	22, 60
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	58
CviJI	RGCY	2 cut(s)	8, 20
CviKI_1	RGCY	2 cut(s)	8, 20
DpnI	GATC	2 cut(s)	24, 62
DpnII	GATC	2 cut(s)	22, 60
FaiI	YATR	6 cut(s)	35, 57, 59, 95, 97, 112
FauNDI	CATATG	1 cut(s)	95
FbaI	TGATCA	2 cut(s)	22, 60
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
FspEI	CC	9 cut(s)	11, 20, 21, 82, 88, 90, 103, 105, 106
GluI	GCNGC	1 cut(s)	72
HphI	GGTGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	26
Ksp22I	TGATCA	2 cut(s)	22, 60
Kzo9I	GATC	2 cut(s)	22, 60
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	2 cut(s)	11, 103
Lsp1109I	GCAGC	1 cut(s)	58
MalI	GATC	2 cut(s)	24, 62
MboI	GATC	2 cut(s)	22, 60
MluCI	AATT	1 cut(s)	30
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	127
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	2 cut(s)	22, 60
PctI	GAATGC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	22, 60
SetI	ASST	2 cut(s)	10, 22
SfcI	CTRYAG	1 cut(s)	76
SgeI	CNNG	3 cut(s)	38, 61, 116
SmiMI	CAYNNNNRTG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	30
TasI	AATT	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.