Rmu_sc0008411.1_g000019

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008411.1
OG0000689
Physical Location & Seq
Forward (+)
92432 .. 95367
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008411.1_g000019.1.cds

Sequence Viewer

Length: 1017 bp
atgttctgccatggccggttgactttcttgcctatgtggtatctgtttgggaaaagatttgttggccccatcacccctctcattctacaactgagagaagaaatgtacaatgagccatacagtgaaattcaatggggcaaagtacgccatctctgtgcaaaggaggataactactatccccatggcaagttacaatgtttgttgtgggatactcttagcacagtttatgagcctcttctttcttgctggcccttcaataagttgagagagaaggctcttcaagaaactattgaaaacattcattatgaagatgaaaatagtagatatataactattggatgtgtggaaaagcccttaatgatgcttgcttgctggattgaagatccgaatggagaatcctttaagaagcatcttgcaagagttatagattacatatgggttgcagaagatggaataactacgcagagttttggtagccaggcatgggatgctagtctttctgttcaagctttgcttgctggaaatctcactgatgaacttggatctgttagggataatccttctggtgacttcttagctcgtttccgtcacatttctaaaggtagttggactttctctgaccaagatcatggatggcaagtgtctgattgtactgcagagagtttgaagtgttgcctactgttttcaatgatgccgacgcaaatcgtgggtgaaccaattgactctgagcgcttgtatgatgctatctatacacctcttgaaggcgaacggtcgaatttggtgcagactgcaatgggactaatgggattaattcatggtggacaggccgagagagaccctactcccattcacagagctgcaaagcttttgattaattctcaattggaaaatggagatttcccccaacaggaactggtgggggctttcaatgttaatgccatgttacactatgcagcatacaggaatatcttcccaatttgggctctcggagaatatcgttcccttgcctccttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

338

Amino Acids

38.65

Weight (kDa)

5.16

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 377, 550
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 2 cut(s) 126, 775
AfaI GTAC 3 cut(s) 107, 144, 652
AfeI AGCGCT 1 cut(s) 731
AfiI CCNNNNNNNGG 4 cut(s) 484, 761, 907, 979
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 4 cut(s) 509, 578, 857, 865
AluI AGCT 4 cut(s) 509, 578, 857, 865
Alw26I GTCTC 1 cut(s) 828
AlwI GGATC 2 cut(s) 377, 550
AlwNI CAGNNNCTG 1 cut(s) 913
Aor51HI AGCGCT 1 cut(s) 731
AoxI GGCC 4 cut(s) 13, 64, 248, 825
ApeKI GCWGC 2 cut(s) 857, 953
ApoI RAATTY 2 cut(s) 126, 775
AseI ATTAAT 2 cut(s) 809, 873
Asp700I GAANNNNTTC 2 cut(s) 297, 968
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 2 cut(s) 65, 249
AsuHPI GGTGA 3 cut(s) 64, 578, 722
BanII GRGCYC 1 cut(s) 985
BbvI GCAGC 2 cut(s) 844, 965
BccI CCATC 4 cut(s) 77, 156, 443, 627
BcgI CGANNNNNNTGC 2 cut(s) 763, 797
BciT130I CCWGG 1 cut(s) 479
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 828
BfaI CTAG 2 cut(s) 492, 1015
BfmI CTRYAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 733
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 2 cut(s) 858, 954
BlsI GCNGC 2 cut(s) 859, 955
Bme1390I CCNGG 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 65, 249
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 5 cut(s) 351, 418, 478, 681, 730
BsaI GGTCTC 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 10, 181
Bsc4I CCNNNNNNNGG 4 cut(s) 484, 761, 907, 979
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 918
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 2 cut(s) 10, 181
BseGI GGATG 3 cut(s) 344, 493, 638
BseLI CCNNNNNNNGG 4 cut(s) 484, 761, 907, 979
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 2 cut(s) 83, 717
BseNI ACTGG 1 cut(s) 918
BseXI GCAGC 2 cut(s) 844, 965
BsgI GTGCAG 1 cut(s) 803
Bsh1285I CGRYCG 1 cut(s) 773
BshFI GGCC 4 cut(s) 15, 66, 250, 827
BsiEI CGRYCG 1 cut(s) 773
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 4 cut(s) 484, 761, 907, 979
BsmAI GTCTC 1 cut(s) 828
BsmFI GGGAC 1 cut(s) 810
BsnI GGCC 4 cut(s) 15, 66, 250, 827
Bso31I GGTCTC 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 3 cut(s) 382, 542, 625
Bsp19I CCATGG 2 cut(s) 10, 181
BspANI GGCC 4 cut(s) 15, 66, 250, 827
BspCNI CTCAG 2 cut(s) 84, 718
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 2 cut(s) 377, 550
BspQI GCTCTTC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 828
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 918
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 10, 181
BssMI GATC 3 cut(s) 382, 542, 625
BssT1I CCWWGG 2 cut(s) 10, 181
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 4 cut(s) 122, 223, 681, 771
Bst6I CTCTTC 2 cut(s) 240, 282
BstAPI GCANNNNNTGC 1 cut(s) 488
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 248, 366, 370, 516
BstDEI CTNAG 4 cut(s) 92, 215, 574, 726
BstDSI CCRYGG 2 cut(s) 10, 181
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 3 cut(s) 344, 493, 638
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 3 cut(s) 385, 545, 628
BstMAI GTCTC 1 cut(s) 828
BstMBI GATC 3 cut(s) 382, 542, 625
BstMCI CGRYCG 1 cut(s) 773
BstMWI GCNNNNNNNGC 3 cut(s) 144, 488, 515
BstNI CCWGG 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 844, 965
BstX2I RGATCY 2 cut(s) 382, 542
BstXI CCANNNNNNTGG 1 cut(s) 629
BstYI RGATCY 2 cut(s) 382, 542
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 4 cut(s) 15, 66, 250, 827
BtgI CCRYGG 2 cut(s) 10, 181
BtsCI GGATG 3 cut(s) 344, 493, 638
BtsIMutI CAGTG 2 cut(s) 127, 528
Cac8I GCNNGC 4 cut(s) 248, 366, 370, 516
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 732
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 65, 249
CseI GACGC 1 cut(s) 706
Csp6I GTAC 3 cut(s) 106, 143, 651
CviAII CATG 6 cut(s) 11, 182, 483, 629, 815, 940
CviQI GTAC 3 cut(s) 106, 143, 651
DdeI CTNAG 4 cut(s) 92, 215, 574, 726
DpnI GATC 3 cut(s) 384, 544, 627
DpnII GATC 3 cut(s) 382, 542, 625
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 240, 282
EarI CTCTTC 2 cut(s) 240, 282
Eco130I CCWWGG 2 cut(s) 10, 181
Eco24I GRGCYC 1 cut(s) 985
Eco31I GGTCTC 1 cut(s) 828
Eco47III AGCGCT 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 2 cut(s) 10, 181
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 2 cut(s) 10, 181
FaeI CATG 6 cut(s) 14, 185, 486, 632, 818, 943
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 810
FatI CATG 6 cut(s) 10, 181, 482, 628, 814, 939
FauNDI CATATG 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 858, 954
FokI GGATG 3 cut(s) 351, 500, 645
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 2 cut(s) 858, 954
FspBI CTAG 2 cut(s) 492, 1015
GlaI GCGC 1 cut(s) 731
GluI GCNGC 2 cut(s) 858, 954
HaeII RGCGCY 1 cut(s) 733
HaeIII GGCC 4 cut(s) 15, 66, 250, 827
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 706
HhaI GCGC 1 cut(s) 732
Hin1II CATG 6 cut(s) 14, 185, 486, 632, 818, 943
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HindIII AAGCTT 2 cut(s) 507, 863
HinfI GANTC 2 cut(s) 395, 722
HpaII CCGG 1 cut(s) 16
HphI GGTGA 3 cut(s) 64, 578, 722
Hpy166II GTNNAC 3 cut(s) 21, 713, 821
Hpy188I TCNGA 5 cut(s) 387, 619, 646, 727, 989
Hpy188III TCNNGA 2 cut(s) 281, 758
Hpy8I GTNNAC 3 cut(s) 21, 713, 821
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 4 cut(s) 262, 265, 570, 755
HpyCH4III ACNGT 4 cut(s) 122, 223, 681, 771
HpyCH4V TGCA 8 cut(s) 158, 416, 443, 656, 784, 791, 860, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 488, 515
HpyF3I CTNAG 4 cut(s) 92, 215, 574, 726
Hsp92II CATG 6 cut(s) 14, 185, 486, 632, 818, 943
HspAI GCGC 1 cut(s) 730
Kzo9I GATC 3 cut(s) 382, 542, 625
LguI GCTCTTC 1 cut(s) 282
Lsp1109I GCAGC 2 cut(s) 844, 965
LweI GCATC 5 cut(s) 351, 418, 478, 681, 730
MaeI CTAG 2 cut(s) 492, 1015
MaeIII GTNAC 4 cut(s) 189, 566, 587, 942
MalI GATC 3 cut(s) 384, 544, 627
MboI GATC 3 cut(s) 382, 542, 625
MboII GAAGA 7 cut(s) 110, 227, 269, 320, 392, 458, 961
MfeI CAATTG 2 cut(s) 717, 881
MflI RGATCY 2 cut(s) 382, 542
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 7 cut(s) 126, 717, 775, 810, 874, 881, 975
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 587
MnlI CCTC 4 cut(s) 87, 157, 243, 765
MroXI GAANNNNTTC 2 cut(s) 297, 968
MseI TTAA 5 cut(s) 356, 402, 809, 873, 933
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 2 cut(s) 717, 881
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 3 cut(s) 144, 488, 515
NcoI CCATGG 2 cut(s) 10, 181
NdeI CATATG 1 cut(s) 434
NdeII GATC 3 cut(s) 382, 542, 625
NlaIII CATG 6 cut(s) 14, 185, 486, 632, 818, 943
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 2 cut(s) 566, 587
PciSI GCTCTTC 1 cut(s) 282
PdmI GAANNNNTTC 2 cut(s) 297, 968
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 2 cut(s) 859, 955
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
PshBI ATTAAT 2 cut(s) 809, 873
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 65, 249
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 382, 542
RsaI GTAC 3 cut(s) 107, 144, 652
RsaNI GTAC 3 cut(s) 106, 143, 651
RseI CAYNNNNRTG 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 5 cut(s) 356, 402, 809, 873, 933
SatI GCNGC 2 cut(s) 858, 954
Sau3AI GATC 3 cut(s) 382, 542, 625
Sau96I GGNCC 2 cut(s) 65, 249
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 985
SetI ASST 6 cut(s) 511, 580, 604, 757, 859, 867
SfaNI GCATC 5 cut(s) 351, 418, 478, 681, 730
SfcI CTRYAG 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 7 cut(s) 126, 717, 775, 810, 874, 881, 975
SspMI CTAG 2 cut(s) 492, 1015
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 2 cut(s) 10, 181
TaaI ACNGT 4 cut(s) 122, 223, 681, 771
TaqI TCGA 1 cut(s) 773
TasI AATT 7 cut(s) 126, 717, 775, 810, 874, 881, 975
TatI WGTACW 2 cut(s) 105, 650
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 5 cut(s) 356, 402, 809, 873, 933
Tru9I TTAA 5 cut(s) 356, 402, 809, 873, 933
TscAI CASTG 2 cut(s) 127, 535
TseFI GTSAC 2 cut(s) 566, 587
TseI GCWGC 2 cut(s) 857, 953
Tsp45I GTSAC 2 cut(s) 566, 587
TspDTI ATGAA 5 cut(s) 290, 321, 327, 549, 803
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 127, 535
VspI ATTAAT 2 cut(s) 809, 873
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 2 cut(s) 126, 775
XmnI GAANNNNTTC 2 cut(s) 297, 968
XspI CTAG 2 cut(s) 492, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.