Rroxscaffold_7G00156410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000689
Physical Location & Seq
Reverse (-)
272796 .. 277580
4785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156410.1

Sequence Viewer

Length: 489 bp
ATGTGCCACTTTTTCCATTCTCTTCGCCTCACTTCCCTCTCCAAGTCCGTGGCGCCTTCGTCACGTGATTCGAGCCGTGGACGACGCAGCAAGGGCGGAAGGAGGAGGCGGCACTGCATTTGGGGGCTTTATCGGAACTCACGTTTCCGGCCACCTCGGGAGGAGTTTCTTGAGGGCTTTTGGAGCTCGGAGGACAACAAATTTGTGGGTATGGATTATGAGAGAGTTTATGCTTCTAAGGCACGTTGTAGCAACGCTTTCCTTAAGACATTATTTGCCCCACTATCAAGTGTGCAAAGAGGATATGAAGCCCAGCATAATGCTGTTGTTGATCAGCGTCTTGCACTTACGAAGATCAACCTAAACATTCGAAAGAAGTGGTTAAGGCCAAGAGTAGACTGGAAAGAGTCAAAAGACCTAGCTAGGGTGAAAAGTTACCTGGCTAAGGCCAAGAGTAGTTATGATCTCAATAGTACTTGTGGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.86

Weight (kDa)

10.5

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 396
AciI CCGC 2 cut(s) 96, 109
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 200
AcvI CACGTG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 2 cut(s) 424, 445
AflII CTTAAG 1 cut(s) 263
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 2 cut(s) 186, 422
AluI AGCT 2 cut(s) 186, 422
Alw21I GWGCWC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 3 cut(s) 149, 386, 447
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspLEI GCGC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 439
AsuII TTCGAA 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 156
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 188
BbrPI CACGTG 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 331
BfaI CTAG 2 cut(s) 419, 423
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 263
BisI GCNGC 2 cut(s) 88, 110
BlsI GCNGC 2 cut(s) 89, 111
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 48, 76, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 445
Bse1I ACTGG 1 cut(s) 404
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 48, 76, 155
BseLI CCNNNNNNNGG 2 cut(s) 424, 445
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 2 cut(s) 118, 176
BseXI GCAGC 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 312
BshFI GGCC 3 cut(s) 151, 388, 449
BshNI GGYRCC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 424, 445
BsnI GGCC 3 cut(s) 151, 388, 449
BsoBI CYCGRG 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 331, 354, 463
BspACI CCGC 2 cut(s) 96, 109
BspANI GGCC 3 cut(s) 151, 388, 449
BspLI GGNNCC 1 cut(s) 54
BspT104I TTCGAA 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 263
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 3 cut(s) 48, 76, 155
BssMI GATC 3 cut(s) 331, 354, 463
BssNI GRCGYC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 237, 444
BstDSI CCRYGG 2 cut(s) 48, 76
BstENI CCTNNNNNAGG 1 cut(s) 443
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 3 cut(s) 334, 357, 466
BstMBI GATC 3 cut(s) 331, 354, 463
BstMWI GCNNNNNNNGC 3 cut(s) 93, 183, 239
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 3 cut(s) 151, 388, 449
BtgI CCRYGG 2 cut(s) 48, 76
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
CfoI GCGC 1 cut(s) 55
CseI GACGC 2 cut(s) 93, 326
Csp6I GTAC 1 cut(s) 474
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 2 cut(s) 237, 444
DinI GGCGCC 1 cut(s) 54
DpnI GATC 3 cut(s) 333, 356, 465
DpnII GATC 3 cut(s) 331, 354, 463
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 186
Eco72I CACGTG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaiI YATR 6 cut(s) 212, 219, 231, 306, 318, 462
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 88, 110
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 88, 110
FspBI CTAG 2 cut(s) 419, 423
GlaI GCGC 1 cut(s) 54
GluI GCNGC 2 cut(s) 88, 110
GsaI CCCAGC 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 151, 388, 449
HapII CCGG 1 cut(s) 148
HgaI GACGC 2 cut(s) 93, 326
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 2 cut(s) 68, 407
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 80, 397
Hpy188I TCNGA 2 cut(s) 135, 190
Hpy188III TCNNGA 2 cut(s) 158, 170
Hpy8I GTNNAC 2 cut(s) 80, 397
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 66, 93
HpyCH4IV ACGT 3 cut(s) 64, 142, 244
HpyCH4V TGCA 3 cut(s) 117, 295, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 183, 239
HpyF3I CTNAG 2 cut(s) 237, 444
HpySE526I ACGT 3 cut(s) 64, 142, 244
Hsp92I GRCGYC 1 cut(s) 53
HspAI GCGC 1 cut(s) 53
KasI GGCGCC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 331, 354, 463
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 5 cut(s) 161, 326, 385, 425, 452
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 2 cut(s) 419, 423
MaeII ACGT 3 cut(s) 64, 142, 244
MaeIII GTNAC 2 cut(s) 60, 434
MalI GATC 3 cut(s) 333, 356, 465
MboI GATC 3 cut(s) 331, 354, 463
MboII GAAGA 2 cut(s) 14, 364
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 200
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 9 cut(s) 38, 47, 96, 99, 154, 165, 166, 184, 293
MseI TTAA 2 cut(s) 264, 383
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 93, 183, 239
NarI GGCGCC 1 cut(s) 53
NdeII GATC 3 cut(s) 331, 354, 463
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 60
NspV TTCGAA 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 89, 111
PleI GAGTC 1 cut(s) 415
PluTI GGCGCC 1 cut(s) 56
PmaCI CACGTG 1 cut(s) 65
PmlI CACGTG 1 cut(s) 65
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 438
PspCI CACGTG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 264, 383
SatI GCNGC 2 cut(s) 88, 110
Sau3AI GATC 3 cut(s) 331, 354, 463
ScaI AGTACT 1 cut(s) 475
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 67, 145, 157, 188, 247, 363, 420, 424, 441
SfoI GGCGCC 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 370
SmlI CTYRAG 2 cut(s) 170, 263
SmoI CTYRAG 2 cut(s) 170, 263
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 96, 109
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 2 cut(s) 419, 423
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 438
TaiI ACGT 3 cut(s) 67, 145, 247
TaqI TCGA 2 cut(s) 71, 370
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 473
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 264, 383
Tru9I TTAA 2 cut(s) 264, 383
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 2 cut(s) 419, 423
ZrmI AGTACT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.