Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

16574594 .. 16576022

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g20460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTTGGCTCTTATTGATGGTGGCCAGGCTGAGAGAGACCCAACACCGTTGCACCGTGCAGCTAGATTTTTGATAAATTCTCAAATGGAGAATGGAGACTTTCCTCAAGAGGAAATTATGGGTGTCTTCAACAGGAACTGTATGATCACGTATGCTGCATACCGGAACATATTCCCTATCTGGGCATTGGGAGAATACCGCTGTCGGGTGTTGCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009555 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010685 GO:0010686 GO:0016043 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0016871 GO:0019742 GO:0019745 GO:0031559 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110

Pfam Domains

Protein Families

Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

74

Amino Acids

8.41

Weight (kDa)

5.66

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_C	PF13243	2 - 67	3.3e-09	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	181, 205
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	30, 90
AlwNI	CAGNNNCTG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	59, 155
ApoI	RAATTY	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	71, 142
BccI	CCATC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	30, 90
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	60, 156
BlsI	GCNGC	2 cut(s)	61, 157
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 205
BseBI	CCWGG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	181, 205
BseMII	CTCAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	71, 142
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	181, 205
BsmAI	GTCTC	2 cut(s)	30, 90
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	30
BssMI	GATC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	48, 56, 140
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	30, 219
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	30, 90
BstMBI	GATC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	71, 142
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	138
CviJI	RGCY	5 cut(s)	8, 24, 29, 62, 218
CviKI_1	RGCY	5 cut(s)	8, 24, 29, 62, 218
DdeI	CTNAG	2 cut(s)	30, 219
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	24
FaiI	YATR	5 cut(s)	119, 143, 153, 160, 170
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	60, 156
Fsp4HI	GCNGC	2 cut(s)	60, 156
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	60, 156
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	163
HpaII	CCGG	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	107
HpyCH4III	ACNGT	3 cut(s)	48, 56, 140
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	4 cut(s)	52, 59, 158, 214
HpyF3I	CTNAG	2 cut(s)	30, 219
HpySE526I	ACGT	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LpnPI	CCDG	6 cut(s)	11, 38, 118, 166, 176, 200
Lsp1109I	GCAGC	2 cut(s)	71, 142
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	149
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	2 cut(s)	76, 114
MluNI	TGGCCA	1 cut(s)	24
MnlI	CCTC	2 cut(s)	103, 114
Mox20I	TGGCCA	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	61, 157
Ppu21I	YACGTR	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	138
SatI	GCNGC	2 cut(s)	60, 156
Sau3AI	GATC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	2 cut(s)	64, 152
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	76, 114
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	3 cut(s)	48, 56, 140
TaiI	ACGT	1 cut(s)	152
TasI	AATT	2 cut(s)	76, 114
TseI	GCWGC	2 cut(s)	59, 155
XapI	RAATTY	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.