Rroxscaffold_4G00297380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000689
Physical Location & Seq
Reverse (-)
17306576 .. 17308958
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297380.1

Sequence Viewer

Length: 255 bp
ATGGAGGAGATGAAATTCCCCATTACAGTCTTTGGCACAAACTATGTCGCATCGTTGAAGGCCAAGATGTCCGTGTGTAGGGGCACTTTTCATCGGGGTTGTACGGCGGTGAAATCACCATGGCCGAGCCCAAAATCTTGTCCCCTTTATCCGAGTAAGCGAAGACTAGGCCGAGCAAACTTCAAAGGACCGAGAATCCTAAGAAGCTTGTTGTTGTGTTCCTCTTGGCAGCTCAATACTCATTCATGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.6

Weight (kDa)

10.75

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 2 cut(s) 58, 184
AluBI AGCT 2 cut(s) 207, 232
AluI AGCT 2 cut(s) 207, 232
AoxI GGCC 3 cut(s) 60, 122, 169
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 108, 121
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 120
BfaI CTAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 3 cut(s) 62, 124, 171
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 3 cut(s) 62, 124, 171
Bsp1286I GDGCHC 2 cut(s) 86, 131
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 107
BspANI GGCC 3 cut(s) 62, 124, 171
BssECI CCNNGG 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 62, 124, 171
BtgI CCRYGG 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 120, 246
CviJI RGCY 6 cut(s) 62, 124, 129, 171, 207, 232
CviKI_1 RGCY 6 cut(s) 62, 124, 129, 171, 207, 232
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 2 cut(s) 123, 249
FaiI YATR 3 cut(s) 45, 121, 247
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 119, 245
Fnu4HI GCNGC 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 230
HaeIII GGCC 3 cut(s) 62, 124, 171
Hin1II CATG 2 cut(s) 123, 249
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 195
HphI GGTGA 2 cut(s) 108, 121
Hpy188I TCNGA 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 2 cut(s) 123, 249
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 167
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 86, 131
MluCI AATT 1 cut(s) 14
MnlI CCTC 1 cut(s) 232
NcoI CCATGG 1 cut(s) 119
NlaIII CATG 2 cut(s) 123, 249
NmeAIII GCCGAG 2 cut(s) 150, 197
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 188
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SatI GCNGC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 188
SduI GDGCHC 2 cut(s) 86, 131
SetI ASST 2 cut(s) 209, 234
SfaNI GCATC 1 cut(s) 59
SinI GGWCC 1 cut(s) 188
Sse9I AATT 1 cut(s) 14
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 28
TaqII GACCGA 1 cut(s) 205
TasI AATT 1 cut(s) 14
TfiI GAWTC 1 cut(s) 195
TseI GCWGC 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 26, 80, 234
TspGWI ACGGA 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 14
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.